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12 Nov 09:14

A Photoaffinity Displacement Assay and Probes to Study the Cyclin‐Dependent Kinase Family

by Emma K. Grant, David J. Fallon, H. Christian Eberl, Ken G. M. Fantom, Francesca Zappacosta, Cassie Messenger, Nicholas C. O. Tomkinson, Jacob T. Bush
Angewandte Chemie International Edition A Photoaffinity Displacement Assay and Probes to Study the Cyclin‐Dependent Kinase Family

Photoaffinity probes were designed to target cyclin‐dependent kinases (CDKs), which can be regarded as the timekeepers of cellular processes. As reported by J. T. Bush and co‐workers in their Research Article (DOI: https://doi.org/10.1002/anie.20190632110.1002/anie.201906321), these probes competitively enrich CDKs from cell lysates, and a biochemical photoaffinity displacement assay was developed to measure compound potency. The seesaw represents the balance of competition between the photoaffinity probe and competitor compound.


07 Oct 07:17

[ASAP] Light-Induced Protein Degradation with Photocaged PROTACs

by Gang Xue†§, Kun Wang‡§, Danli Zhou†, Hanbing Zhong*‡, and Zhengying Pan*†

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Journal of the American Chemical Society
DOI: 10.1021/jacs.9b06422
16 Sep 08:05

A Photoaffinity Displacement Assay and Probes to Study the Cyclin‐Dependent Kinase Family

by Emma K. Grant, David J. Fallon, H. Christian Eberl, Ken G. M. Fantom, Francesca Zappacosta, Cassie Messenger, Nicholas C. O. Tomkinson, Jacob Bush
Angewandte Chemie International Edition A Photoaffinity Displacement Assay and Probes to Study the Cyclin‐Dependent Kinase Family

Selectivity snapshots with PALs: Photoaffinity probes were designed to target the cyclin‐dependent kinase family, and found to competitively enrich CDKs from cell lysates. Subsequently, a biochemical photoaffinity displacement assay was developed to measure compound potency.


Abstract

The CDK family plays a crucial role in the control of the cell cycle. Dysregulation and mutation of the CDKs has been implicated in cancer and the CDKs have been investigated extensively as potential therapeutic targets. Selective inhibition of specific isoforms of the CDKs is crucial to achieve therapeutic effect while minimising toxicity. We present a group of photoaffinity probes designed to bind to the family of CDKs. The site of crosslinking of the optimised probe, as well as its ability to enrich members of the CDK family from cell lysates, was investigated. In a proof of concept study, we subsequently developed a photoaffinity probe‐based competition assay to profile CDK inhibitors. We anticipate that this approach will be widely applicable to the study of small molecule binding to protein families of interest.

06 Aug 06:49

[ASAP] Profile of a Highly Selective Quaternized Pyrrolidine Betaine avß6 Integrin Inhibitor—(3S)-3-(3-(3,5-Dimethyl-1H-pyrazol-1-yl)phenyl)-4-((1S and 1R,3R)-1-methyl-3-(2-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)ethyl)pyrrolidin-1-ium-1-yl)butanoate Synthesized by Stereoselective Methylation

by Tim N. Barrett†, Jonathan A. Taylor†*, Daniel Barker†, Panayiotis A. Procopiou†, James D. F. Thompson†‡, John Barrett†, Joelle Le†, Sean M. Lynn†, Peter Pogany†, Cassie Pratley†, John M. Pritchard†, James A. Roper†, James E. Rowedder†, Robert J. Slack†, Giovanni Vitulli†, Simon J. F. Macdonald†, and William J. Kerr‡

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.9b00819
30 Jun 18:59

SO2F2‐Activated Efficient Beckmann Rearrangement of Ketoximes for Accessing Amides and Lactams

by Guofu Zhang, Yiyong Zhao, Lidi Xuan, Chengrong Ding
European Journal of Organic Chemistry SO2F2‐Activated Efficient Beckmann Rearrangement of Ketoximes for Accessing Amides and Lactams

A novel protocol for the efficient activation of the Beckmann rearrangement utilizing the readily available sulfuryl fluoride (SO2F2 gas) is reported. The substrate scope of this methodology has been demonstrated by 37 examples with good to nearly quantitative isolated yields in a short time. A tentative mechanism was proposed involving formation and elimination of sulfonyl ester.


A novel, mild and practical protocol for the efficient activation of the Beckmann rearrangement utilizing the readily available and economical sulfuryl fluoride (SO2F2 gas) has been developed. The substrate scope of the operationally simple methodology has been demonstrated by 37 examples with good to nearly quantitative isolated yields (over 90 % yield in most cases) in a short time, including B(OH)2, COOH, NH2, and OH substituted substrates. A tentative mechanism was proposed involving formation and elimination of key intermediate, sulfonyl ester.

15 Jun 17:15

[ASAP] Expanding Reactivity in DNA-Encoded Library Synthesis via Reversible Binding of DNA to an Inert Quaternary Ammonium Support

by Dillon T. Flood†#, Shota Asai†#, Xuejing Zhang†‡, Jie Wang†, Leonard Yoon†, Zoe¨ C. Adams†, Blythe C. Dillingham†, Brittany B. Sanchez?, Julien C. Vantourout†, Mark E. Flanagan§, David W. Piotrowski§, Paul Richardson?, Samantha A. Green†, Ryan A. Shenvi†, Jason S. Chen?, Phil S. Baran*†, and Philip E. Dawson*†

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Journal of the American Chemical Society
DOI: 10.1021/jacs.9b03774
15 Jun 17:08

De novo macrocyclic peptides that specifically modulate Lys48-linked ubiquitin chains

by Mickal Nawatha

Nature Chemistry, Published online: 10 June 2019; doi:10.1038/s41557-019-0278-x

Modulating particular ubiquitin chains using binding molecules is challenging given the diversity of chain lengths and linkages found in vivo. Now, tight binding modulators that are specific to K48-linked ubiquitin chains have been found by combining protein synthesis and screening of macrocyclic peptide ligands.
10 Jun 09:13

[ASAP] Genetically Encoding Photocaged Quinone Methide to Multitarget Protein Residues Covalently in Vivo

by Jun Liu†¶, Shanshan Li†‡¶, Nayyar A. Aslam§¶, Feng Zheng§, Bing Yang†, Rujin Cheng?, Nanxi Wang†, Sharon Rozovsky?, Peng G. Wang‡, Qian Wang§, and Lei Wang*†

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Journal of the American Chemical Society
DOI: 10.1021/jacs.9b01738
24 May 13:59

[ASAP] Rapid Covalent-Probe Discovery by Electrophile-Fragment Screening

by Efrat Resnick, Anthony Bradley, Jinrui Gan, Alice Douangamath, Tobias Krojer, Ritika Sethi, Paul P. Geurink, Anthony Aimon, Gabriel Amitai, Dom Bellini, James Bennett, Michael Fairhead, Oleg Fedorov, Ronen Gabizon, Jin Gan, Jingxu Guo, Alexander Plotnikov, Nava Reznik, Gian Filippo Ruda, Laura Di´az-Sa´ez, Verena M. Straub, Tamas Szommer, Srikannathasan Velupillai, Daniel Zaidman, Yanling Zhang, Alun R. Coker, Christopher G. Dowson, Haim M. Barr, Chu Wang, Kilian V.M. Huber, Paul E. Brennan, Huib Ovaa, Frank von Delft, Nir London

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Journal of the American Chemical Society
DOI: 10.1021/jacs.9b02822
23 Apr 07:11

Concerted Nucleophilic Aromatic Substitution Reactions

by John Murphy, Simon Rohrbach, Andrew J. Smith, Jia Hao Pang, Darren L. Poole, Tell Tuttle, Shunsuke Chiba

Recent developments in experimental and computational chemistry have identified a rapidly growing class of nucleophilic aromatic substitutions that proceed by concerted (cSNAr),1,2 rather than classical two‐step, SNAr mechanisms. Whereas traditional SNAr reactions require substantial activation of the aromatic ring by electron‐withdrawing substituents, such activating groups are not mandatory in the concerted pathways. At this crucial stage of growth in understanding of these reactions, our aim is to review the current state of knowledge on CSNAr reactions. [The review includes many types of substrates and nucleophiles; it specifically excludes transition metal‐related processes that might involve concerted substitutions on arenes].

23 Apr 06:58

[ASAP] Copper-Catalyzed Trifluoromethylation of Alkyl Bromides

by David J. P. Kornfilt, David W. C. MacMillan

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Journal of the American Chemical Society
DOI: 10.1021/jacs.9b03024
17 Apr 16:29

[ASAP] Diazo-Transfer Reagent 2-Azido-4,6-dimethoxy-1,3,5-triazine Displays Highly Exothermic Decomposition Comparable to Tosyl Azide

by Sebastian P. Green, Andrew D. Payne, Katherine M. Wheelhouse, Jason P. Hallett, Philip W. Miller, James A. Bull

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The Journal of Organic Chemistry
DOI: 10.1021/acs.joc.9b00269
17 Apr 16:15

Concerted Nucleophilic Aromatic Substitution Reactions

by John Murphy, Simon Rohrbach, Andrew J. Smith, Jia Hao Pang, Darren L. Poole, Tell Tuttle, Shunsuke Chiba
Angewandte Chemie International Edition Concerted Nucleophilic Aromatic Substitution Reactions

Concerted or stepwise? A class of nucleophilic aromatic substitutions has been developed that proceed by concerted (cSNAr) rather than classical, two‐step, SNAr mechanisms. Whereas traditional SNAr reactions require substantial activation of the aromatic ring by electron‐withdrawing substituents, such activating groups are not mandatory in the concerted pathways.


Abstract

Recent developments in experimental and computational chemistry have identified a rapidly growing class of nucleophilic aromatic substitutions that proceed by concerted (cSNAr) rather than classical, two‐step, SNAr mechanisms. Whereas traditional SNAr reactions require substantial activation of the aromatic ring by electron‐withdrawing substituents, such activating groups are not mandatory in the concerted pathways.

04 Apr 09:27

[ASAP] Electrochemically Driven, Ni-Catalyzed Aryl Amination: Scope, Mechanism, and Applications

by Yu Kawamata, Julien C. Vantourout, David P. Hickey, Peng Bai, Longrui Chen, Qinglong Hou, Wenhua Qiao, Koushik Barman, Martin A. Edwards, Alberto F. Garrido-Castro, Justine N. deGruyter, Hugh Nakamura, Kyle Knouse, Chuanguang Qin, Khalyd J. Clay, Denghui Bao, Chao Li, Jeremy T. Starr, Carmen Garcia-Irizarry, Neal Sach, Henry S. White, Matthew Neurock, Shelley D. Minteer, Phil S. Baran

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Journal of the American Chemical Society
DOI: 10.1021/jacs.9b01886
04 Apr 09:25

[ASAP] Tandem Acyl Substitution/Michael Addition of Thioesters with Vinylmagnesium Bromide

by Vera Hirschbeck, Marlene Böldl, Paul H. Gehrtz, Ivana Fleischer

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Organic Letters
DOI: 10.1021/acs.orglett.9b00538
22 Feb 08:08

[ASAP] Targeting the MKK7–JNK (Mitogen-Activated Protein Kinase Kinase 7–c-Jun N-Terminal Kinase) Pathway with Covalent Inhibitors

by Patrik Wolle, Julia Hardick, Shane J. F. Cronin, Julian Engel, Matthias Baumann, Jonas Lategahn, Josef M. Penninger, Daniel Rauh

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.9b00102
15 Feb 08:38

[ASAP] The Alkyne Moiety as a Latent Electrophile in Irreversible Covalent Small Molecule Inhibitors of Cathepsin K

by Elma Mons, Ineke D. C. Jansen, Jure Loboda, Bjorn R. van Doodewaerd, Jill Hermans, Martijn Verdoes, Constant A. A. van Boeckel, Peter A. van Veelen, Boris Turk, Dusan Turk, Huib Ovaa

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Journal of the American Chemical Society
DOI: 10.1021/jacs.8b11027
13 Feb 14:28

PROTACs suppression of CDK4/6, crucial kinases for cell cycle regulation in cancer

Chem. Commun., 2019, 55,2704-2707
DOI: 10.1039/C9CC00163H, Communication
Bosheng Zhao, Kevin Burgess
PROTACs based on two selective, FDA approved, CDK4/6 inhibitors were formed. These PROTACs at nanomolar concentrations deplete CDK4/6.
The content of this RSS Feed (c) The Royal Society of Chemistry
11 Feb 14:35

[ASAP] Cannabinoids from Cannabis sativa L.: A New Tool Based on HPLC–DAD–MS/MS for a Rational Use in Medicinal Chemistry

by Michele Protti, Virginia Brighenti, Maria Rita Battaglia, Lisa Anceschi, Federica Pellati, Laura Mercolini

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ACS Medicinal Chemistry Letters
DOI: 10.1021/acsmedchemlett.8b00571
06 Feb 08:10

[ASAP] Fragment-Based Covalent Ligand Screening Enables Rapid Discovery of Inhibitors for the RBR E3 Ubiquitin Ligase HOIP

by Henrik Johansson, Yi-Chun Isabella Tsai, Ken Fantom, Chun-Wa Chung, Sandra Kümper, Luigi Martino, Daniel A. Thomas, H. Christian Eberl, Marcel Muelbaier, David House, Katrin Rittinger

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Journal of the American Chemical Society
DOI: 10.1021/jacs.8b13193
28 Jan 09:02

Photoredox‐Catalyzed Cyclobutane Synthesis by a Deboronative Radical Addition–Polar Cyclization Cascade

by Chao Shu, Adam Noble, Varinder Kumar Aggarwal
Angewandte Chemie International Edition Photoredox‐Catalyzed Cyclobutane Synthesis by a Deboronative Radical Addition–Polar Cyclization Cascade

Arylboronate complexes formed from alkylboronic esters and phenyllithium were found to undergo facile single‐electron oxidation to form alkyl radicals. The novel use of these complexes as radical precursors enabled the development of a photoredox‐catalyzed cyclobutane synthesis proceeding through a radical‐polar crossover mechanism.


Abstract

Photoredox‐catalyzed methylcyclobutanations of alkylboronic esters are described. The reactions proceed through single‐electron transfer induced deboronative radical addition to an electron‐deficient alkene followed by single‐electron reduction and polar 4‐exotet cyclization with a pendant alkyl halide. Key to the success of the methodology was the use of easily oxidizable arylboronate complexes. Structurally diverse cyclobutanes are shown to be conveniently prepared from readily available alkylboronic esters and a range of haloalkyl alkenes. The mild reactions display excellent functional group tolerance, and the radical addition‐polar cyclization cascade also enables the synthesis of 3‐, 5‐, 6‐, and 7‐membered rings.

28 Jan 08:07

[ASAP] Emerging and Re-Emerging Warheads for Targeted Covalent Inhibitors: Applications in Medicinal Chemistry and Chemical Biology

by Matthias Gehringer, Stefan A. Laufer

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.8b01153
25 Jan 08:05

[ASAP] Transition-Metal-Free Desulfinative Cross-Coupling of Heteroaryl Sulfinates with Grignard Reagents

by Jun Wei, Huamin Liang, Chuanfa Ni, Rong Sheng, Jinbo Hu

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Organic Letters
DOI: 10.1021/acs.orglett.8b03918
22 Jan 10:02

Copper‐Catalyzed Enantioselective Construction of Tertiary Propargylic Sulfones

by José Enrique Gómez, Alex Cristofol, Arjan Willem Kleij
Angewandte Chemie International Edition Copper‐Catalyzed Enantioselective Construction of Tertiary Propargylic Sulfones

Copper to the rescue: A general method for the synthesis of propargylic sulfones featuring quaternary stereocenters has been developed. The method relies on a copper‐catalyzed sulfonylation of propargylic cyclic carbonates using sodium sulfinates. It provides the first example of such a transition‐metal‐catalyzed enantioselective propargylic substitution reaction with sulfur‐centered nucleophiles and gives access to functionalized tertiary sulfones.


Abstract

Tertiary propargylic sulfones are of significant importance in organic synthesis and medicinal chemistry, but to date no general asymmetric synthesis approach has been developed. We disclose a versatile copper‐catalyzed sulfonylation of propargylic cyclic carbonates using sodium sulfinates that allows the construction of propargylic sulfones featuring elusive quaternary stereocenters. This method provides the first successful example of such an enantioselective propargylic sulfonylation, features high asymmetric induction, wide functional group tolerance, and scalability, and enables attractive product diversification.

21 Jan 07:53

[ASAP] NHC-Catalyzed Deamination of Primary Sulfonamides: A Platform for Late-Stage Functionalization

by Patrick S. Fier, Kevin M. Maloney

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Journal of the American Chemical Society
DOI: 10.1021/jacs.8b11800
31 Oct 11:03

[ASAP] Discovery of a Novel Inhaled PI3Kd Inhibitor for the Treatment of Respiratory Diseases

by Montse Erra, Joan Taltavull, Francisco Javier Bernal, Juan Francisco Caturla, Marta Carrascal, Lluís Pagès, Marta Mir, Sònia Espinosa, Jordi Gràcia, María Domínguez, Mar Sabaté, Stéphane Paris, Mónica Maldonado, Begoña Hernández, Mónica Bravo, Elena Calama, Montserrat Miralpeix, Martin D. Lehner, Marta Calbet

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.8b00873
22 Oct 07:24

[ASAP] Direct C–C Bond Formation from Alkanes Using Ni-Photoredox Catalysis

by Laura K. G. Ackerman, Jesus I. Martinez Alvarado, Abigail G. Doyle

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Journal of the American Chemical Society
DOI: 10.1021/jacs.8b09191
19 Oct 08:19

[ASAP] Alkyl Sulfinates: Radical Precursors Enabling Drug DiscoveryMiniperspective

by Joel M. Smith, Janice A. Dixon, Justine N. deGruyter, Phil S. Baran

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.8b01303
05 Oct 07:49

[ASAP] Photoactivation of MDM2 Inhibitors: Controlling Protein–Protein Interaction with Light

by Mickel J. Hansen, Femke M. Feringa, Piermichele Kobauri, Wiktor Szymanski, René H. Medema, Ben L. Feringa

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Journal of the American Chemical Society
DOI: 10.1021/jacs.8b04870
24 Sep 07:50

SNAr stands corrected

by Yinghua Jin

SNAr stands corrected

S<sub>N</sub>Ar stands corrected, Published online: 20 September 2018; doi:10.1038/s41557-018-0138-0

Dynamic covalent chemistry combines the error-correcting behaviour of supramolecular chemistry with the robustness of covalent bonding, but relies on a somewhat limited set of reactions. Now, the classic nucleophilic aromatic substitution (SNAr) reaction has been shown to be reversible and self-correcting.