Shared posts
[ASAP] Copying of Mixed-Sequence RNA Templates inside Model Protocells
[ASAP] Dynamic Covalent Metathesis in the C-C/C-N Exchange between Knoevenagel Compounds and Imines
Bottom-up synthesis of multifunctional nanoporous graphene
Nanosize pores can turn semimetallic graphene into a semiconductor and, from being impermeable, into the most efficient molecular-sieve membrane. However, scaling the pores down to the nanometer, while fulfilling the tight structural constraints imposed by applications, represents an enormous challenge for present top-down strategies. Here we report a bottom-up method to synthesize nanoporous graphene comprising an ordered array of pores separated by ribbons, which can be tuned down to the 1-nanometer range. The size, density, morphology, and chemical composition of the pores are defined with atomic precision by the design of the molecular precursors. Our electronic characterization further reveals a highly anisotropic electronic structure, where orthogonal one-dimensional electronic bands with an energy gap of ~1 electron volt coexist with confined pore states, making the nanoporous graphene a highly versatile semiconductor for simultaneous sieving and electrical sensing of molecular species.
Predicting reaction performance in C-N cross-coupling using machine learning
Machine learning methods are becoming integral to scientific inquiry in numerous disciplines. We demonstrated that machine learning can be used to predict the performance of a synthetic reaction in multidimensional chemical space using data obtained via high-throughput experimentation. We created scripts to compute and extract atomic, molecular, and vibrational descriptors for the components of a palladium-catalyzed Buchwald-Hartwig cross-coupling of aryl halides with 4-methylaniline in the presence of various potentially inhibitory additives. Using these descriptors as inputs and reaction yield as output, we showed that a random forest algorithm provides significantly improved predictive performance over linear regression analysis. The random forest model was also successfully applied to sparse training sets and out-of-sample prediction, suggesting its value in facilitating adoption of synthetic methodology.
[ASAP] Controlling the Recognition and Reactivity of Alkyl Ammonium Guests Using an Anion Coordination-Based Tetrahedral Cage
[ASAP] Feedback-Induced Temporal Control of “Breathing” Polymersomes To Create Self-Adaptive Nanoreactors
Enzymatic construction of highly strained carbocycles
Small carbocycles are structurally rigid and possess high intrinsic energy due to their ring strain. These features lead to broad applications but also create challenges for their construction. We report the engineering of hemeproteins that catalyze the formation of chiral bicyclobutanes, one of the most strained four-membered systems, via successive carbene addition to unsaturated carbon-carbon bonds. Enzymes that produce cyclopropenes, putative intermediates to the bicyclobutanes, were also identified. These genetically encoded proteins are readily optimized by directed evolution, function in Escherichia coli, and act on structurally diverse substrates with high efficiency and selectivity, providing an effective route to many chiral strained structures. This biotransformation is easily performed at preparative scale, and the resulting strained carbocycles can be derivatized, opening myriad potential applications.
Reversible dispersion and release of carbon nanotubes via cooperative clamping interactions with hydrogen-bonded nanorings
DOI: 10.1039/C8SC00843D, Edge Article
We describe the reversible dispersion of SWCNTs through cooperative encapsulation within H-bonded dinucleoside macrocycles.
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Experimentally quantifying anion polarizability at the air/water interface
Experimentally quantifying anion polarizability at the air/water interface
Experimentally quantifying anion polarizability at the air/water interface, Published online: 03 April 2018; doi:10.1038/s41467-018-03598-x
Understanding anion-specific interactions with hydrophobic interfaces is challenging due to an absence of local structural probes. Here, the authors experimentally quantify the anisotropy of perchlorate’s polarizability at the air/water interface, a window into anion and solvation shell structure.Biomimetic temporal self-assembly via fuel-driven controlled supramolecular polymerization
Biomimetic temporal self-assembly via fuel-driven controlled supramolecular polymerization
Biomimetic temporal self-assembly via fuel-driven controlled supramolecular polymerization, Published online: 30 March 2018; doi:10.1038/s41467-018-03542-z
Modulating the structural and transient characteristics of synthetic nanostructures can be achieved by temporal control of supramolecular assemblies. Here the authors show a biomimetic, ATP-selective and fuel-driven controlled supramolecular polymerization of a phosphate receptor functionalised monomer.[ASAP] Designing Helical Molecular Capsules Based on Folded Aromatic Amide Oligomers
A nonconjugated radical polymer glass with high electrical conductivity
Solid-state conducting polymers usually have highly conjugated macromolecular backbones and require intentional doping in order to achieve high electrical conductivities. Conversely, single-component, charge-neutral macromolecules could be synthetically simpler and have improved processibility and ambient stability. We show that poly(4-glycidyloxy-2,2,6,6-tetramethylpiperidine-1-oxyl), a nonconjugated radical polymer with a subambient glass transition temperature, underwent rapid solid-state charge transfer reactions and had an electrical conductivity of up to 28 siemens per meter over channel lengths up to 0.6 micrometers. The charge transport through the radical polymer film was enabled with thermal annealing at 80°C, which allowed for the formation of a percolating network of open-shell sites in electronic communication with one another. The electrical conductivity was not enhanced by intentional doping, and thin films of this material showed high optical transparency.
A supramolecular biomimetic skin combining a wide spectrum of mechanical properties and multiple sensory capabilities
A supramolecular biomimetic skin combining a wide spectrum of mechanical properties and multiple sensory capabilities
A supramolecular biomimetic skin combining a wide spectrum of mechanical properties and multiple sensory capabilities, Published online: 19 March 2018; doi:10.1038/s41467-018-03456-w
Biomimetic skin finds wide application in robotics and smart wearable devices but materials mimicking mechanical properties of skin and responding at the same time to multiple stimuli are rarely realized. Here the authors demonstrate a biomimetic hydrogel with multiple sensory capabilities which imitates mechanical properties of natural skin.Basic Remarks on Acidity
Unified acidity: One scale for all! How can Brønsted acidity be compared in different solvents? How can the acid strengths of liquid and gaseous acids be compared? How can their properties be accurately extracted thermodynamically for applications such as liquid chromatography, polymerization, catalysis, and other areas? Unified acidity based on the chemical potential of the proton allows for all of this and much more.
[Review]
Daniel Himmel, Valentin Radtke, Burkhard Butschke, Ingo Krossing
Angew. Chem. Int. Ed., March 15, 2018, https://doi.org/10.1002/anie.201709057 Read article
Sigma-Hole Interactions in Anion Recognition
[ASAP] Supramolecular Pseudorotaxane Polymers from Biscryptands and Bisparaquats
A halogen bond-mediated highly active artificial chloride channel with high anticancer activity
DOI: 10.1039/C8SC00602D, Edge Article
Modularly tunable monopeptidic scaffold enables rapid and combinatorial evolution of a halogen bond-mediated highly active chloride channel, exhibiting an excellent anticancer activity toward human breast cancer.
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Fatty Acid/Phospholipid Blended Membranes: A Potential Intermediate State in Protocellular Evolution
Abstract
Prior to the evolution of membrane proteins, intrinsic membrane stability and permeability to polar solutes are essential features of a primitive cell membrane. These features are difficult to achieve simultaneously in model protocells made of either pure fatty acid or phospholipid membranes, raising the intriguing question of how the transition from fatty acid to phospholipid membranes might have occurred while continuously supporting encapsulated reactions required for genomic replication. Here, the properties of a blended membrane system composed of both oleic acid (OA), a monoacyl fatty acid, and 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC), a diacyl phospholipid are described. This hybrid vesicle system exhibits high stability to divalent cations (Mg2+), while simultaneously maintaining its permeability to small charged molecules such as nucleotides and divalent ions such as Mg2+. This combination of features facilitates key reactions expected to occur during a transition from primitive to modern cells, including nonenzymatic RNA replication, and is also compatible with highly evolved functions such as the ribosomal translation of a protein. The observations support the hypothesis that the early transition from fatty acid to phospholipid membranes could be accomplished through intermediate states in which membranes are composed of amphiphile mixtures, and do not require protein transporters.
The initial transition from fatty acid membranes (gray) to phospholipid membranes (purple) in primitive cells may have been facilitated by the properties of membranes composed of both amphiphiles. Such hybrid membranes achieve high stability to divalent cations while maintaining permeability to small charged molecules, thus allowing critical chemical reactions to proceed within primitive cells.
[ASAP] Ion–Hydrocarbon and/or Ion–Ion Interactions: Direct and Reverse Hofmeister Effects in a Synthetic Host
Dissipative Self-Assembly Driven by the Consumption of Chemical Fuels
Abstract
Dissipative self-assembly leads to structures and materials that exist away from equilibrium by continuously exchanging energy and materials with the external environment. Although this mode of self-assembly is ubiquitous in nature, where it gives rise to functions such as signal processing, motility, self-healing, self-replication, and ultimately life, examples of dissipative self-assembly processes in man-made systems are few and far between. Herein, recent progress in developing diverse synthetic dissipative self-assembly systems is discussed. The systems reported thus far can be categorized into three classes, in which: i) the fuel chemically modifies the building blocks, thus triggering their self-assembly, ii) the fuel acts as a template interacting with the building blocks noncovalently, and iii) transient states are induced by the addition of two mutually exclusive stimuli. These early studies give rise to materials that would be difficult to obtain otherwise, including hydrogels with programmable lifetimes, vesicular nanoreactors, and membranes exhibiting transient conductivity.
Although dissipative self-assembly is ubiquitous in nature, it is largely absent from man-made systems. Recent progress in designing structures and materials that require chemical fuels to exist is reviewed. These studies give rise to unique materials, such as self-destructing gels and membranes exhibiting transient conductivity.
Efficient Light-Induced pKa-Modulation coupled to Base-Catalyzed Photochromism
Photoswitchable acid-base pairs, allowing for a reversible alteration of their pKa values, are attractive molecular tools to control chemical and biological processes by light. A significant, light-induced pKa change of three units in aqueous medium has been realized involving two thermally stable states, which can be interconverted using UV and green light. The light-induced pKa modulation is based on incorporating a 3-H-thiazol-2-one moiety into the framework of a diarylethene photoswitch, which upon photochemical ring-closure loses the heteroaromatic stabilization of the corresponding, negatively charged base and hence, becomes significantly less acidic. In addition, the efficiency of the photoreactions in the deprotonated state is drastically increased, thereby giving rise to catalytically enhanced photochromism. It appears that protonation has a significant influence on the shape of ground and excited state potential energy surface as indicated by quantum chemical calculations. Using this concept of interconnected photoisomerization and acid-base equilibria allows to adjust the degree of photoconversion by the pH of the solution and constitutes a powerful tool to precisely and remotely control the charge state by light.
The Molecular Industrial Revolution: Automated Synthesis of Small Molecules
Abstract
Today we are poised for a transition from the highly customized crafting of specific molecular targets by hand to the increasingly general and automated assembly of different types of molecules with the push of a button. Creating machines that are capable of making many different types of small molecules on demand, akin to that which has been achieved on the macroscale with 3D printers, is challenging. Yet important progress is being made toward this objective with two complementary approaches: 1) Automation of customized synthesis routes to different targets by machines that enable the use of many reactions and starting materials, and 2) automation of generalized platforms that make many different targets using common coupling chemistry and building blocks. Continued progress in these directions has the potential to shift the bottleneck in molecular innovation from synthesis to imagination, and thereby help drive a new industrial revolution on the molecular scale.
Automation is enabling a new Industrial Revolution, this time on the molecular scale. This Minireview provides insights into the ongoing transition from manual to automated organic synthesis. Akin to a 3D printer for molecules, continued progress in this frontier area will democratize innovation on the molecular scale and shift the rate-limiting step in new molecular function discovery from synthesis to imagination.
Mechanochemistry as an emerging tool for molecular synthesis: what can it offer?
DOI: 10.1039/C7SC05371A, Perspective
Mechanochemistry is becoming more widespread as a technique for molecular synthesis with new mechanochemical reactions being discovered at increasing frequency. This perspective explores what more it can offer, aside from the clear benefit of reduced solvent consumption.
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Frontispiece: Chiral Catenanes and Rotaxanes: Fundamentals and Emerging Applications
Chiral catenanes and rotaxanes are the subject of the Minireview by N. H. Evans on page 3101 ff. Mechanically interlocked molecules may be chiral by either inclusion of a classical chiral element and/or as a consequence of the mechanical bond. Possessing 3D structures, chiral catenanes and rotaxanes are beginning to emerge as excellent candidates for applications such as chiral host-guest recognition and asymmetric catalysis.
Physical Removal of Anions from Aqueous Media by Means of a Macrocycle-Containing Polymeric Network
On the Upper Limits of Oxidation States in Chemistry
The highest oxidation state (OS) of elements in compounds is limited not only by the number and the ionization energies of their valence electrons, but also by the electronic properties of the ligands. Spontaneous oxidation of the ligand and reduction of the metal center results in strongly correlated, open-shell, multicenter bonds. A joint theoretical–experimental case study of PtO42+ isomers reveals a maximum OS near +8 for chemical substances under ambient conditions.
[Communication]
Shu-Xian Hu, Wan-Lu Li, Jun-Bo Lu, Junwei Lucas Bao, Haoyu S. Yu, Donald G. Truhlar, John K. Gibson, Joaquim Marçalo, Mingfei Zhou, Sebastian Riedel, W. H. Eugen Schwarz, Jun Li
Angew. Chem. Int. Ed., February 19, 2018, https://doi.org/10.1002/anie.201711450 Read article