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Anion-Selective Cholesterol Decorated Macrocyclic Transmembrane Ion Carriers
X-ray Structure Analysis of N-Containing Nucleophilic Compounds by the Crystalline Sponge Method
Abstract
Crystalline sponges (CS) used under a set of standard conditions have often failed to give viable N-containing nucleophilic compounds. Despite the high affinity of these nucleophiles to the binding sites of the CS, N-containing compounds considerably harm the coordination framework of the CS during the guest-soaking step. Herein, it is disclosed that these compounds are efficiently absorbed into the CS, without harming the host, under mild conditions (<4 °C, <2 μg) that normally do not work for common organic guests. Moreover, the use of ZnCl2 as the metal component of CS significantly improved the tolerance and robustness of the host framework toward N-containing compounds. Out of 22 drug (or drug-like) N-containing compounds chosen from the WHO model list of essential medicines, we succeeded in analyzing 17 analytes with the modified protocols and/or by using the ZnCl2-noded CS. This demonstrates that the CS method is now a practical tool for drug-discovery research in pharmaceutical industries.
Overcoming trypophobia: trapping N-containing compounds in crystalline sponges (CS) has been problematic because N-containing nucleophilic compounds considerably harm the host. This significant limitation was overcome by developing a new CS with much better tolerance and robustness toward such compounds. The hit rate of the CS method was raised to about 80 %.
Supramolecular Sensors for Opiates and Their Metabolites
On-Surface Synthesis of Porous Carbon Nanoribbons from Polymer Chains
Scavenger templates: a systems chemistry approach to the synthesis of porphyrin-based molecular wires
DOI: 10.1039/C7CC04289B, Communication
A hexapyridyl template can be used to indirectly up-regulate the synthesis of a linear porphyrin dodecamer, by suppressing polymerization.
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Supramolecular Assembly of Peptide Amphiphiles
Gelation-driven selection in dynamic covalent C[double bond, length as m-dash]C/C[double bond, length as m-dash]N exchange
DOI: 10.1039/C7SC02827J, Edge Article
Gelation-driven amplification of an optimal gel-forming constituent is demonstrated for dynamic covalent libraries based on C[double bond, length as m-dash]C/C[double bond, length as m-dash]N exchange, through selection of the components leading to the most stable gel.
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Hydrogenation of fluoroarenes: Direct access to all-cis-(multi)fluorinated cycloalkanes
All-cis-multifluorinated cycloalkanes exhibit intriguing electronic properties. In particular, they display extremely high dipole moments perpendicular to the aliphatic ring, making them highly desired motifs in material science. Very few such motifs have been prepared, as their syntheses require multistep sequences from diastereoselectively prefunctionalized precursors. Herein we report a synthetic strategy to access these valuable materials via the rhodium–cyclic (alkyl)(amino)carbene (CAAC)–catalyzed hydrogenation of readily available fluorinated arenes in hexane. This route enables the scalable single-step preparation of an abundance of multisubstituted and multifluorinated cycloalkanes, including all-cis-1,2,3,4,5,6-hexafluorocyclohexane as well as cis-configured fluorinated aliphatic heterocycles.
Molecular machines open cell membranes
Molecular machines open cell membranes
Nature 548, 7669 (2017). doi:10.1038/nature23657
Authors: Víctor García-López, Fang Chen, Lizanne G. Nilewski, Guillaume Duret, Amir Aliyan, Anatoly B. Kolomeisky, Jacob T. Robinson, Gufeng Wang, Robert Pal & James M. Tour
Beyond the more common chemical delivery strategies, several physical techniques are used to open the lipid bilayers of cellular membranes. These include using electric and magnetic fields, temperature, ultrasound or light to introduce compounds into cells, to release molecular species from cells or to selectively induce programmed cell death (apoptosis) or uncontrolled cell death (necrosis). More recently, molecular motors and switches that can change their conformation in a controlled manner in response to external stimuli have been used to produce mechanical actions on tissue for biomedical applications. Here we show that molecular machines can drill through cellular bilayers using their molecular-scale actuation, specifically nanomechanical action. Upon physical adsorption of the molecular motors onto lipid bilayers and subsequent activation of the motors using ultraviolet light, holes are drilled in the cell membranes. We designed molecular motors and complementary experimental protocols that use nanomechanical action to induce the diffusion of chemical species out of synthetic vesicles, to enhance the diffusion of traceable molecular machines into and within live cells, to induce necrosis and to introduce chemical species into live cells. We also show that, by using molecular machines that bear short peptide addends, nanomechanical action can selectively target specific cell-surface recognition sites. Beyond the in vitro applications demonstrated here, we expect that molecular machines could also be used in vivo, especially as their design progresses to allow two-photon, near-infrared and radio-frequency activation.
A Critical Cross-Catalytic Relationship Determines the Outcome of Competition in a Replicator Network
Tuning Cycloparaphenylene Host Properties by Chemical Modification
Particulate photocatalysts for overall water splitting
Particulate photocatalysts for overall water splitting
Nature Reviews Materials, Published online: 1 August 2017; doi:10.1038/natrevmats.2017.50
Overall water splitting using powdered photocatalysts is a promising approach to large-scale solar hydrogen production. This Review details recent developments in particulate photocatalysts for overall water splitting based on one- and two-step photoexcitation systems.
A Rewritable, Reprogrammable, Dual Light-Responsive Polymer Actuator
Abstract
We report on the fabrication of a rewritable and reprogrammable dual-photoresponsive liquid crystalline-based actuator containing an azomerocyanine dye that can be locally converted into the hydroxyazopyridinium form by acid treatment. Each dye absorbs at a different wavelength giving access to programmable actuators, the folding of which can be controlled by using different colors of light. The acidic patterning is reversible and allows the erasing and rewriting of patterns in the polymer film, giving access to reusable, adjustable soft actuators.
Bending patterns: Rewritable and reprogrammable actuators can be obtained by using the local activation of an initially chemically homogenous film. The locally activated material is exposed to UV light, which results in the precise folding of the actuator. By switching the wavelength, a different shape can be obtained. Furthermore, the pattern can be erased and a new one can be written, giving access to a multitude of actuated shapes.
Sono-RAFT Polymerization in Aqueous Medium
Abstract
The ultrasonic irradiation of aqueous solution is demonstrated to be a suitable source of initiating radicals for a controlled radical polymerization when conducted in the presence of a thiocarbonylthio-containing reversible addition–fragmentation chain transfer (RAFT) agent. This allows for a highly “green” method of externally regulated/controlled polymerization with a potentially broad scope for polymerizable monomers and/or polymer structures.
Make some noise: A sonochemically induced RAFT polymerization with efficient temporal control is demonstrated using high-frequency ultrasound. Unlike the low frequencies used in mechanically induced polymerizations the high frequency employed produces very little shear force, potentially avoiding chain-breaking “depolymerization” events.
Cation–Anion Arrangement Patterns in Self-Assembled Pd2L4 and Pd4L8 Coordination Cages
Dissipative Assembly of Aqueous Carboxylic Acid Anhydrides Fueled by Carbodiimides
A new design for an artificial cell: polymer microcapsules with addressable inner compartments that can harbor biomolecules, colloids or microbial species
DOI: 10.1039/C7SC01335C, Edge Article
Multicompartment capsules with control over the contents of each inner compartment are prepared by a simple, oil-free technique.
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Compartmentalizing Supramolecular Hydrogels Using Aqueous Multi-phase Systems
Abstract
A generic method is used for compartmentalization of supramolecular hydrogels by using water-in-water emulsions based on aqueous multi-phase systems (AMPS). By forming the low-molecular-weight hydrogel throughout all phases of all-aqueous emulsions, distinct, micro-compartmentalized materials were created. This structuring approach offers control over the composition of each type of the compartments by directing the partitioning of objects to be encapsulated. Moreover, this method allows for barrier-less, dynamic exchange of even large hydrophilic solutes (MW≈60 kDa) between separate aqueous compartments. These features are expected to find use in the fields of, for instance, micro-structured catalysts, templating, and tissue engineering.
Hydrogel compartments: A versatile approach is used to create aqueous microcompartments inside low-molecular-weight hydrogels using polymer phase separation. Distinct micrometer-sized domains are thus created with controlled composition and unrestricted exchange of even large polar solutes. The method may potentially find use for templating porous soft materials or in the fabrication of tissue engineering scaffolds.
Hydrogen-bonded rosettes comprising [small pi]-conjugated systems as building blocks for functional one-dimensional assemblies
DOI: 10.1039/C7CC04172A, Feature Article
One-dimensional nanoassemblies obtained by the columnar stacking of hydrogen-bonded supermacrocycles (rosettes) comprising [small pi]-conjugated molecules.
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Enzyme-Mediated Directional Transport of a Small-Molecule Walker With Chemically Identical Feet
Chiral Crystalline Sponges for the Absolute Structure Determination of Chiral Guests
Biguanides, anion receptors and sensors
DOI: 10.1039/C7CC05012G, Communication
Biguanides are strong bases (pKa > 10), their protonated forms bind anions and may therefore act as receptors for anions.
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Autonomous model protocell division driven by molecular replication
Autonomous model protocell division driven by molecular replication
Nature Communications, Published online: 10 August 2017; doi:10.1038/s41467-017-00177-4
Coupling compartmentalisation and molecular replication is essential for the development of evolving chemical systems. Here the authors show an oil-in-water droplet containing a self-replicating amphiphilic imine that can undergo repeated droplet division.
Anion-π Catalysts with Axial Chirality
Abstract
The idea of anion-π catalysis is to stabilize anionic transition states by anion-π interactions on aromatic surfaces. For asymmetric anion-π catalysis, π-acidic surfaces have been surrounded with stereogenic centers. This manuscript introduces the first anion-π catalysts that operate with axial chirality. Bifunctional catalysts with tertiary amine bases next to π-acidic naphthalenediimide planes are equipped with a bulky aromatic substituent in the imide position to produce separable atropisomers. The addition of malonic acid half thioesters to enolate acceptors is used for evaluation. In the presence of a chiral axis, the selective acceleration of the disfavored but relevant enolate addition was much better than with point chirality, and enantioselectivity could be observed for the first time for this reaction with small-molecule anion-π catalysts. Enantioselectivity increased with the π acidity of the π surface, whereas the addition of stereogenic centers around the aromatic plane did not cause further improvements. These results identify axial chirality of the active aromatic plane generated by atropisomerism as an attractive strategy for asymmetric anion-π catalysis.
Chiral planes: To stabilize anionic transition states by anion-π interactions on aromatic surfaces stereoselectively, symmetry breaking of this active plane with axial chirality is more powerful than the accumulation of point chirality around the same active plane.
Proteins evolve on the edge of supramolecular self-assembly
Proteins evolve on the edge of supramolecular self-assembly
Nature 548, 7666 (2017). doi:10.1038/nature23320
Authors: Hector Garcia-Seisdedos, Charly Empereur-Mot, Nadav Elad & Emmanuel D. Levy
The self-association of proteins into symmetric complexes is ubiquitous in all kingdoms of life. Symmetric complexes possess unique geometric and functional properties, but their internal symmetry can pose a risk. In sickle-cell disease, the symmetry of haemoglobin exacerbates the effect of a mutation, triggering assembly into harmful fibrils. Here we examine the universality of this mechanism and its relation to protein structure geometry. We introduced point mutations solely designed to increase surface hydrophobicity among 12 distinct symmetric complexes from Escherichia coli. Notably, all responded by forming supramolecular assemblies in vitro, as well as in vivo upon heterologous expression in Saccharomyces cerevisiae. Remarkably, in four cases, micrometre-long fibrils formed in vivo in response to a single point mutation. Biophysical measurements and electron microscopy revealed that mutants self-assembled in their folded states and so were not amyloid-like. Structural examination of 73 mutants identified supramolecular assembly hot spots predictable by geometry. A subsequent structural analysis of 7,471 symmetric complexes showed that geometric hot spots were buffered chemically by hydrophilic residues, suggesting a mechanism preventing mis-assembly of these regions. Thus, point mutations can frequently trigger folded proteins to self-assemble into higher-order structures. This potential is counterbalanced by negative selection and can be exploited to design nanomaterials in living cells.
Synthesis and Structures of Zigzag Shaped [12]Cyclo-p-phenylene Composed of Dinaphthofuran Units and Biphenyl Units
Highly elastic binders integrating polyrotaxanes for silicon microparticle anodes in lithium ion batteries
Lithium-ion batteries with ever-increasing energy densities are needed for batteries for advanced devices and all-electric vehicles. Silicon has been highlighted as a promising anode material because of its superior specific capacity. During repeated charge-discharge cycles, silicon undergoes huge volume changes. This limits cycle life via particle pulverization and an unstable electrode-electrolyte interface, especially when the particle sizes are in the micrometer range. We show that the incorporation of 5 weight % polyrotaxane to conventional polyacrylic acid binder imparts extraordinary elasticity to the polymer network originating from the ring sliding motion of polyrotaxane. This binder combination keeps even pulverized silicon particles coalesced without disintegration, enabling stable cycle life for silicon microparticle anodes at commercial-level areal capacities.
Experimentally realized mechanochemistry distinct from force-accelerated scission of loaded bonds
Stretching polymer chains accelerates dissociation of a variety of internal covalent bonds, to an extent that correlates well with the force experienced by the scissile bond. Recent theory has also predicted scenarios in which applied force accelerates dissociation of unloaded bonds and kinetically strengthens strained bonds. We report here unambiguous experimental validation of this hypothesis: Detailed kinetic measurements demonstrate that stretching phosphotriesters accelerates dissociation of the unloaded phosphorus-oxygen bond orthogonal to the pulling axis, whereas stretching organosiloxanes inhibits dissociation of the aligned loaded silicon-oxygen bonds. Qualitatively, the outcome is determined by phosphoester elongation and siloxane contraction along the pulling axis in the respective rate-determining transition states. Quantitatively, the results agree with a simple mechanochemical kinetics model.
Recognition and Extraction of Cesium Hydroxide and Carbonate by using a Neutral Multitopic Ion-Pair Receptor
Abstract
Current approaches to lowering the pH of basic media rely on the addition of a proton source. An alternative approach is described herein that involves the liquid–liquid extraction-based removal of cesium salts, specifically CsOH and Cs2CO3, from highly basic media. A multitopic ion-pair receptor (2) is used that can recognize and extract the hydroxide and carbonate anions as their cesium salts, as confirmed by 1H NMR spectroscopic titrations, ICP-MS, single-crystal structural analyses, and theoretical calculations. A sharp increase in the pH and cesium concentrations in the receiving phase is observed when receptor 2 is employed as a carrier in U-tube experiments involving the transport of CsOH through an intervening chloroform layer. The pH of the source phase likewise decreases.
Less is less: Lowering pH by extraction. The elusive inorganic hydroxide and carbonate anions are captured in the form of their cesium salts by a metal-free multitopic ion-pair receptor consisting of a hemispherand-strapped calix[4]pyrrole. Direct liquid–liquid extraction and transport studies reveal that it is possible to lower the pH of a highly basic aqueous phase through the removal of the hydroxide anion instead of the addition of protons.
Dynamic Covalent Chemistry of Aldehyde Enamines: BiIII- and ScIII-Catalysis of Amine–Enamine Exchange
Abstract
The dynamic exchange of enamines from secondary amines and enolizable aldehydes has been demonstrated in organic solvents. The enamine exchange with amines was efficiently catalyzed by Bi(OTf)3 and Sc(OTf)3 (2 mol %) and the equilibria (60 mm) could be attained within hours at room temperature. The formed dynamic covalent systems displayed high stabilities in basic environment with <2 % by-product formation within one week after complete equilibration. This study expands the scope of dynamic C−N bonds from imine chemistry to enamines, enabling further dynamic methodologies in exploration of this important class of structures in systems chemistry.
System Of A D(own)ynamic Enamine: The dynamic exchange of enamines from secondary amines and enolizable aldehydes can be efficiently catalyzed by BiIII and ScIII at room temperature. Dynamic enamine systems, stable under basic conditions, were formed in organic solvents with up to >300 times higher equilibration rates than the corresponding uncatalyzed reactions.