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24 Jun 07:03

Dynamic covalent chemistry: Tales from the cryptates

by Stuart Cantrill

Nature Chemistry 7, 536 (2015). doi:10.1038/nchem.2297

Author: Stuart Cantrill

23 Jun 08:32

Emergence of Complex Chemistry on an Organic Monolayer

by Leonard J. Prins

TOC Graphic

Accounts of Chemical Research
DOI: 10.1021/acs.accounts.5b00173
22 Jun 09:27

Visible-Light-Activated Molecular Switches

by David Bléger, Stefan Hecht

Abstract

The ability to influence key properties of molecular systems by using light holds much promise for the fields of materials science and life sciences. The cornerstone of such systems is molecules that are able to reversibly photoisomerize between two states, commonly referred to as photoswitches. One serious restriction to the development of functional photodynamic systems is the necessity to trigger switching in at least one direction by UV light, which is often damaging and penetrates only partially through most media. This review provides a summary of the different conceptual strategies for addressing molecular switches in the visible and near-infrared regions of the optical spectrum. Such visible-light-activated molecular switches tremendously extend the scope of photoswitchable systems for future applications and technologies.

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Let there be light: This Minireview outlines different conceptual strategies for the design of photochromic compounds that can be toggled between their two switching states by employing only low-energy visible (or near-infrared) light. All-visible-light photoswitches are promising candidates for future biomedical and material applications.

19 Jun 09:05

Complex Functional Systems with Three Different Types of Dynamic Covalent Bonds

by Kang-Da Zhang, Stefan Matile

Abstract

Multicomponent surface architectures are introduced that operate with three different dynamic covalent bonds. Disulfide exchange under basic conditions accounts for the growth of π stacks on solid surfaces. Hydrazone exchange under acidic conditions is used to add a second coaxial string or stack, and boronic ester exchange under neutral conditions is used to co-align a third one. The newly introduced boronic ester exchange chemistry is compatible with stack and string exchange without interference from the orthogonal hydrazone and disulfide exchange. The functional relevance of surface architectures with three different dynamic covalent bonds is exemplified with the detection of polyphenol natural products, such as epigallocatechin gallate, in competition experiments with alizarin red. These results describe synthetic strategies to create functional systems of unprecedented sophistication with regard to dynamic covalent chemistry.

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Designer architectures: Disulfide exchange under basic conditions, hydrazone exchange under acidic conditions, and boronic ester exchange at neutral pH values are combined to build multicomponent functional surface architectures using dynamic covalent chemistry. TSA/TSR=templated stack addition/release.

18 Jun 11:04

Goldberg Active Template Synthesis of a [2]Rotaxane Ligand for Asymmetric Transition-Metal Catalysis

by Steven Hoekman, Matthew O. Kitching, David A. Leigh, Marcus Papmeyer and Diederik Roke

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Journal of the American Chemical Society
DOI: 10.1021/jacs.5b04726
08 Jun 09:04

Encapsulation of Halocarbons in a Tetrahedral Anion Cage

by Dong Yang, Jie Zhao, Yanxia Zhao, Yibo Lei, Liping Cao, Xiao-Juan Yang, Martin Davi, Nader Amadeu de Sousa, Christoph Janiak, Zhibin Zhang, Yao-Yu Wang, Biao Wu

Abstract

Caged supramolecular systems are promising hosts for guest inclusion, separation, and stabilization. Well-studied examples are mainly metal-coordination-based or covalent architectures. An anion-coordination-based cage that is capable of encapsulating halocarbon guests is reported for the first time. This A4L4-type (A=anion) tetrahedral cage, [(PO4)4L4]12−, assembled from a C3-symmetric tris(bisurea) ligand (L) and phosphate ion (PO43−), readily accommodates a series of quasi-tetrahedral halocarbons, such as the Freon components CFCl3, CF2Cl2, CHFCl2, and C(CH3)F3, and chlorocarbons CH2Cl2, CHCl3, CCl4, C(CH3)Cl3, C(CH3)2Cl2, and C(CH3)3Cl. The guest encapsulation in the solid state is confirmed by crystal structures, while the host–guest interactions in solution were demonstrated by NMR techniques.

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Caged supramolecular systems are promising hosts for guest inclusion, separation, and stabilization. The first examples of the inclusion chemistry of anion coordination in a tetrahedral cage are reported. A wide range of the harmful fluoro- und chlorocarbon guests were investigated (see picture).

05 Jun 10:07

Orthogonal breaking and forming of dynamic covalent imine and disulfide bonds in aqueous solution

Chem. Commun., 2015, 51,11052-11055
DOI: 10.1039/C5CC02716K, Communication
Michael E. Bracchi, David A. Fulton
Orthogonal bond-breaking and forming of dynamic covalent disulfide and imine bonds in aqueous solution is demonstrated.
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02 Jun 14:08

The synthesis of optically active N-C axially chiral tetrahydroquinoline and its response to an acid-accelerated molecular rotor

Chem. Commun., 2015, 51,11229-11232
DOI: 10.1039/C5CC03659C, Communication
Yuya Suzuki, Masato Kageyama, Ryuichi Morisawa, Yasuo Dobashi, Hiroshi Hasegawa, Satoshi Yokojima, Osamu Kitagawa
The synthesis of an optically active N-C axially chiral amine and its response to a new type of acid-accelerated molecular rotor were achieved.
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02 Jun 08:10

Fluorescent carbon quantum dots, capacitance and catalysis active porous carbon microspheres from beer

RSC Adv., 2015, 5,48665-48674
DOI: 10.1039/C5RA05365J, Paper
Zhiyong Gao, Xiaorui Wang, Jiuli Chang, Dapeng Wu, Lan Wang, Xiao Liu, Fang Xu, Yuming Guo, Kai Jiang
Fluorescent nitrogen containing carbon quantum dots (NCQDs) and porous carbon microspheres (PCMs) were simultaneously synthesized by a facile hydrothermal method using beer as precursor.
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29 May 07:05

Light-Fueled Microscopic Walkers

by Hao Zeng, Piotr Wasylczyk, Camilla Parmeggiani, Daniele Martella, Matteo Burresi, Diederik Sybolt Wiersma
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The first microscopic artificial walker equipped with liquid-crystalline elastomer muscle is reported. The walker is fabricated by direct laser writing, is smaller than any known living terrestrial creatures, and is capable of several autonomous locomotions on different surfaces.

28 May 07:04

Self-Assembly of Nanometer-Sized Boroxine Cages from Diboronic Acids

by Kosuke Ono, Kohei Johmoto, Nobuhiro Yasuda, Hidehiro Uekusa, Shintaro Fujii, Manabu Kiguchi and Nobuharu Iwasawa

TOC Graphic

Journal of the American Chemical Society
DOI: 10.1021/jacs.5b02716
27 May 08:47

Halogen Bonding Molecular Capsules

by Oliver Dumele, Nils Trapp, François Diederich

Abstract

Molecular capsules based solely on the interaction of halogen bonding (XB) are presented along with their host–guest binding properties in solution. The first example of a well-defined four-point XB supramolecular system is realized by decorating resorcin[4]arene cavitands with polarized halogen atoms for dimerization with tetra(4-pyridyl) resorcin[4]arene cavitands. NMR binding data for the F, Cl, Br, and I cavitands as the XB donor show association constants (Ka) of up to 5370 M−1G283 K=−4.85 kcal mol−1, for I), even in XB-competitive solvent, such as deuterated benzene/acetone/methanol (70:30:1) at 283 K, where comparable monodentate model systems show no association. The XB capsular geometry is evidenced by two-dimensional HOESY NMR, and the thermodynamic profile shows that capsule formation is enthalpically driven. Either 1,4-dioxane or 1,4-dithiane are encapsulated within each of the two separate cavities within the XB capsule, with of up to Ka=9.0 108 M−2G283 K=−11.6 kcal mol−1).

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Time for halogens: Self-assembly of supramolecular capsules solely by halogen bonding (XB) is realized on the platform of resorcin[4]arene cavitands. The halogenated donor hemisphere binds in a 180° fashion through tetradentate XB to the acceptor hemisphere for capsule formation in solution. Guest inclusion inside the XB capsule is demonstrated and quantified.

25 May 14:02

Isomerization of coencapsulated molecules

Publication date: 3 June 2015
Source:Tetrahedron Letters, Volume 56, Issue 23
Author(s): Kang-da Zhang , Julius Rebek Jr.
A cylindrical capsule host, held together by hydrogen bonds, takes up guests with polar solvent molecules. The arrangements and motions of molecules in the host’s space are deduced from NMR experiments.

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23 May 12:52

Expanded Porphyrin-Anion Supramolecular Assemblies: Environmentally Responsive Sensors for Organic Solvents and Anions

by Zhan Zhang, Dong Sub Kim, Chung-Yon Lin, Huacheng Zhang, Aaron D. Lammer, Vincent M. Lynch, Ilya Popov, Ognjen Š. Miljanić, Eric V. Anslyn and Jonathan L. Sessler

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Journal of the American Chemical Society
DOI: 10.1021/jacs.5b03131
20 May 12:46

A molecular shuttle that operates inside a metal–organic framework

by Kelong Zhu

Nature Chemistry 7, 514 (2015). doi:10.1038/nchem.2258

Authors: Kelong Zhu, Christopher A. O'Keefe, V. Nicholas Vukotic, Robert W. Schurko & Stephen J. Loeb

The piston-like, translational motion of a molecular shuttle — a process that is fundamental to many mechanically interlocked molecular switches and machines — has now been demonstrated to occur inside the highly organized and dense structure (containing approximately 1021 shuttles per cm3) of a metal–organic framework material.

19 May 14:46

Recent developments in carbon nanomaterial sensors

Chem. Soc. Rev., 2015, 44,4433-4453
DOI: 10.1039/C4CS00379A, Review Article
Frederico R. Baptista, S. A. Belhout, S. Giordani, S. J. Quinn
The structural diversity of carbon nanomaterials provides an array of unique electronic, magnetic and optical properties, which when combined with their robust chemistry and ease of manipulation, makes them attractive candidates for sensor applications. In this review recent developments in the use of carbon nanoparticles and nanostructures as sensors and biosensors are explored.
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13 May 14:38

Cumulene Rotaxanes: Stabilization and Study of [9]Cumulenes

by Michael Franz, Johanna A. Januszewski, Dominik Wendinger, Christian Neiss, Levon D. Movsisyan, Frank Hampel, Harry L. Anderson, Andreas Görling, Rik R. Tykwinski
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[n]Cumulenes are difficult to characterize owing to their reactivity. In their Communication (DOI: 10.1002/anie.201501810), R. R. Tykwinski and co-workers present an approach–for the stabilization of [n]cumulenes based on locking the cumulene–within a rotaxane. The rotaxane acts as a “life saver” to provide molecules sufficiently stable for solution- and solid-state studies. The result is stable cumulene rotaxanes that enable the study of properties as a function of cumulene length in unprecedented detail.

11 May 08:53

Solution-Phase Dynamic Assembly of Permanently Interlocked Aryleneethynylene Cages through Alkyne Metathesis

by Qi Wang, Chao Yu, Hai Long, Ya Du, Yinghua Jin, Wei Zhang

Abstract

Highly stable permanently interlocked aryleneethynylene molecular cages were synthesized from simple triyne monomers using dynamic alkyne metathesis. The interlocked complexes are predominantly formed in the reaction solution in the absence of any recognition motif and were isolated in a pure form using column chromatography. This study is the first example of the thermodynamically controlled solution-phase synthesis of interlocked organic cages with high stability.

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All knotted up: Permanently interlocked aryleneethynylene cages were prepared through thermodynamically controlled alkyne metathesis from simple monomers in solution. This template-free approach favors at equilibrium the formation of the interlocked complexes (see picture) over that of independent cages, despite the unfavorable entropy loss associated with catenation.

11 May 08:53

A Solomon Link through an Interwoven Molecular Grid

by Jonathon E. Beves, Jonathan J. Danon, David A. Leigh, Jean-François Lemonnier, Iñigo J. Vitorica-Yrezabal

Abstract

A molecular Solomon link was synthesized through the assembly of an interwoven molecular grid consisting of four bis(benzimidazolepyridyl)benzthiazolo[5,4-d]thiazole ligands and four zinc(II), iron(II), or cobalt(II) cations, followed by ring-closing olefin metathesis. NMR spectroscopy, mass spectrometry, and X-ray crystallography confirmed the doubly interlocked topology, and subsequent demetalation afforded the wholly organic Solomon link. The synthesis, in which each metal ion defines the crossing point of two ligand strands, suggests that interwoven molecular grids should be useful scaffolds for the rational construction of other topologically complex structures.

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Gridlocked: A molecular Solomon link was obtained in 72 % yield through the self-assembly of a 2×2 interwoven molecular grid consisting of four thiazole ligands and four transition-metal cations, followed by ring-closing olefin metathesis. Interwoven grids should prove to be useful intermediates in the synthesis to higher-order molecular knots and links.

07 May 13:43

Catenanes: Fifty Years of Molecular Links

by Guzmán Gil-Ramírez, David A. Leigh, Alexander J. Stephens

Abstract

Half a century after Schill and Lüttringhaus carried out the first directed synthesis of a [2]catenane, a plethora of strategies now exist for the construction of molecular Hopf links (singly interlocked rings), the simplest type of catenane. The precision and effectiveness with which suitable templates and/or noncovalent interactions can arrange building blocks has also enabled the synthesis of intricate and often beautiful higher order interlocked systems, including Solomon links, Borromean rings, and a Star of David catenane. This Review outlines the diverse strategies that exist for synthesizing catenanes in the 21st century and examines their emerging applications and the challenges that still exist for the synthesis of more complex topologies.

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Half a century after Schill and Lüttringhaus carried out the first directed synthesis of a [2]catenane, a plethora of strategies now exist for the construction of interlocked molecular rings. Effective template synthesis enables the synthesis of higher order interlocked systems. This Review outlines the diverse strategies that exist for forming catenanes, their applications, and the important challenges that remain in the field of chemical topology.

05 May 15:00

DYNAMERS: dynamic polymers as self-healing materials

Chem. Soc. Rev., 2015, 44,3786-3807
DOI: 10.1039/C5CS00194C, Review Article
Nabarun Roy, Bernd Bruchmann, Jean-Marie Lehn
An overview of recent advances made in the field of constitutional dynamic materials, in particular dynamic polymers, dynamers, displaying self-healing features.
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04 May 12:15

[Materials Science] Seeing sonic hot spots

by Phil Szuromi
Mechanical impact can detonate explosives, but how impact heats these materials to initiate reactions has been unclear. You et al. used mild ultrasound irradiation to study – [Read More]
04 May 08:08

Gating the photochromism of an azobenzene by strong host-guest interactions in a divalent pseudo[2]rotaxane

Chem. Commun., 2015, 51,9777-9780
DOI: 10.1039/C5CC02811F, Communication
Open Access Open Access
Creative Commons Licence&nbsp This article is licensed under a Creative Commons Attribution 3.0 Unported Licence.
Mirko Lohse, Karol Nowosinski, Nora L. Traulsen, Andreas J. Achazi, Larissa K. S. von Krbek, Beate Paulus, Christoph A. Schalley, Stefan Hecht
Photoisomerisation of an E-configured azobenzene guest is controlled by a complementary host leading to formation of a divalent pseudo[2]rotaxane complex.
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04 May 07:05

Rectifying Electron-Transport Properties through Stacks of Aromatic Molecules Inserted into a Self-Assembled Cage

by Shintaro Fujii, Tomofumi Tada, Yuki Komoto, Takafumi Osuga, Takashi Murase, Makoto Fujita and Manabu Kiguchi

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Journal of the American Chemical Society
DOI: 10.1021/jacs.5b00086
30 Apr 12:36

A coumarin dimer probe of mechanochemical scission efficiency in the sonochemical activation of chain-centered mechanophore polymers

Chem. Commun., 2015, 51,9157-9160
DOI: 10.1039/C5CC01836F, Communication
Zachary S. Kean, Gregory R. Gossweiler, Tatiana B. Kouznetsova, Gihan B. Hewage, Stephen L. Craig
A coumarin dimer mechanophore is used to probe the effect of polymer size and polydispersity on mechanochemical activation.
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30 Apr 12:29

Ring Tension Applied to Thiol-Mediated Cellular Uptake

by Giulio Gasparini, Gevorg Sargsyan, Eun-Kyoung Bang, Naomi Sakai, Stefan Matile

Abstract

The objective of the study was to explore the potential of ring tension in cyclic disulfides for thiol-mediated cellular uptake. Fluorescent probes that cannot enter cells were equipped with cyclic disulfides of gradually increasing ring tension. As demonstrated by flow cytometry experiments, uptake into HeLa Kyoto cells increased with increasing tension. Differences in carbon-sulfur-sulfur-carbon (CSSC) dihedral angles as small as 8° caused significant changes in uptake efficiency. Uptake with high ring tension was better than with inactivated or activated linear disulfides or with thiols. Conversion of thiols on the cell surface into sulfides and disulfides decreased the uptake. Reduction of exofacial disulfides into thiols increased the uptake of transporters with disulfides and inactivated controls with thiols. These results confirm the occurrence of dynamic covalent disulfide-exchange chemistry on cell surfaces. Mechanistic and colocalization studies indicate that endocytosis does not fully account for this cellular uptake with ring tension.

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Mounting tension: Ring tension, which has been exploited for the modification of biological systems in many different ways, with click chemistry being a notable example, was applied to thiol-mediated cellular uptake. Fluorescent probes were conjugated to cyclic disulfides with varying degrees of ring tension and uptake into human cells was found to increase with increasing tension.

30 Apr 12:28

A Small Molecule Walks Along a Surface Between Porphyrin Fences That Are Assembled In Situ

by Sam Haq, Bareld Wit, Hongqian Sang, Andrea Floris, Yu Wang, Jianbo Wang, Lluïsa Pérez-García, Lev Kantorovitch, David B. Amabilino, Rasmita Raval

Abstract

An on-surface bimolecular system is described, comprising a simple divalent bis(imidazolyl) molecule that is shown to “walk” at room temperature via an inchworm mechanism along a specific pathway terminated at each end by oligomeric “fences” constructed on a monocrystalline copper surface. Scanning tunneling microscopy shows that the motion of the walker occurs along the [1equation image0] direction of the Cu surface with remarkably high selectivity and is effectively confined by the orthogonal construction of covalent porphyrin oligomers along the [001] surface direction, which serve as barriers. Density functional theory shows that the mobile molecule walks by attaching and detaching the nitrogen atoms in its imidazolyl “legs” to and from the protruding close-packed rows of the metal surface and that it can transit between two energetically equivalent extended and contracted conformations by overcoming a small energy barrier.

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Walk the line: A bis(imidazolyl) compound “walks” along an anisotropic monocrystalline copper surface in one preferred direction with remarkably high selectivity. The motion of the walker can be effectively confined by on-surface synthesis of porphyrin oligomer fences oriented orthogonal to the walking direction, which act as insurmountable barriers.

29 Apr 07:19

Wavelength-selective cleavage of photoprotecting groups: strategies and applications in dynamic systems

Chem. Soc. Rev., 2015, 44,3358-3377
DOI: 10.1039/C5CS00118H, Tutorial Review
Mickel J. Hansen, Willem A. Velema, Michael M. Lerch, Wiktor Szymanski, Ben L. Feringa
Wavelength-selective deprotection is an attractive method to control multiple functions in one system using light.
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28 Apr 11:43

The dynamic, size-dependent properties of [5]-[12]cycloparaphenylenes

Chem. Soc. Rev., 2015, 44,6401-6410
DOI: 10.1039/C5CS00143A, Tutorial Review
Evan R. Darzi, Ramesh Jasti
A collection of data and discussion on the optical, electronic, and solid-state structure of [5]-[12]cycloparaphenylene.
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28 Apr 09:02

Cumulene Rotaxanes: Stabilization and Study of [9]Cumulenes

by Michael Franz, Johanna A. Januszewski, Dominik Wendinger, Christian Neiss, Levon D. Movsisyan, Frank Hampel, Harry L. Anderson, Andreas Görling, Rik R. Tykwinski

Abstract

The stabilization of long [n]cumulenes has traditionally been achieved by placing sterically bulky “protecting groups” at the termini, which shield the reactive carbon chain from unwanted reactions. Herein, we present an alternative strategy: stabilization through threading the sp-hybridized carbon chain through a phenanthroline-based macrocycle. The result is stable [9]cumulene rotaxanes that enable the study of properties as a function of length for [n]cumulenes in unprecedented detail, including by quantitative UV/Vis spectroscopy, cyclic voltammetry, and differential scanning calorimetry. The experimental results are supported by DFT calculations.

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Loaded and locked: An approach to stabilizing [n]cumulenes was developed based on locking the cumulene within a rotaxane. The result is a stabilized [9]cumulene that enables the study of properties as a function of cumulene length in unprecedented detail, including by quantitative UV/Vis spectroscopy, cyclic voltammetry, and differential scanning calorimetry. The experimental results are supported by DFT calculations.