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24 Mar 17:03

Isolation and Synthesis of a Bacterially Produced Inhibitor of Rosette Development in Choanoflagellates

by Alexandra M. Cantley, Arielle Woznica, Christine Beemelmanns, Nicole King and Jon Clardy

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Journal of the American Chemical Society
DOI: 10.1021/jacs.6b01190
19 Mar 18:27

Routes of Synthesis of Carbapenems for Optimizing Both the Inactivation of l,d-Transpeptidase LdtMt1 of Mycobacterium tuberculosis and the Stability toward Hydrolysis by β-Lactamase BlaC

by Laura Iannazzo, Daria Soroka, Sébastien Triboulet, Matthieu Fonvielle, Fabrice Compain, Vincent Dubée, Jean-Luc Mainardi, Jean-Emmanuel Hugonnet, Emmanuelle Braud, Michel Arthur and Mélanie Etheve-Quelquejeu

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.6b00096
19 Mar 13:23

Structure and mechanism of the essential two-component signal-transduction system WalKR in Staphylococcus aureus

by Quanjiang Ji

Article

The WalKR signal transduction system is involved in extracellular signal recognition, but the details of this function are not well established. Here, the authors report the crystal structure of this two-component system alongside the characterisation of a small-molecule activator.

Nature Communications doi: 10.1038/ncomms11000

Authors: Quanjiang Ji, Peter J. Chen, Guangrong Qin, Xin Deng, Ziyang Hao, Zdzislaw Wawrzak, Won-Sik Yeo, Jenny Winjing Quang, Hoonsik Cho, Guan-Zheng Luo, Xiaocheng Weng, Qiancheng You, Chi-Hao Luan, Xiaojing Yang, Taeok Bae, Kunqian Yu, Hualiang Jiang, Chuan He

19 Mar 13:22

Versatile protein tagging in cells with split fluorescent protein

by Daichi Kamiyama

Article

Tagging proteins with fluorescent proteins is a powerful method for both imaging and non-imaging applications. Here the authors use the eleventh β-strand of sfGFP and sfCherry as epitope tags for multicolour imaging and amplified signals by tandem arrangement; shortness of the tag enabled introduction into genomic loci using CRISPR/Cas9.

Nature Communications doi: 10.1038/ncomms11046

Authors: Daichi Kamiyama, Sayaka Sekine, Benjamin Barsi-Rhyne, Jeffrey Hu, Baohui Chen, Luke A. Gilbert, Hiroaki Ishikawa, Manuel D. Leonetti, Wallace F. Marshall, Jonathan S. Weissman, Bo Huang

19 Mar 13:08

Chemoproteomic profiling of host and pathogen enzymes active in cholera

by Stavroula K Hatzios

Nature Chemical Biology 12, 268 (2016). doi:10.1038/nchembio.2025

Authors: Stavroula K Hatzios, Sören Abel, Julianne Martell, Troy Hubbard, Jumpei Sasabe, Diana Munera, Lars Clark, Daniel A Bachovchin, Firdausi Qadri, Edward T Ryan, Brigid M Davis, Eranthie Weerapana & Matthew K Waldor

17 Mar 17:51

A Host-Produced Autoinducer-2 Mimic Activates Bacterial Quorum Sensing

by Anisa S. Ismail, Julie S. Valastyan, Bonnie L. Bassler
Host-bacterial symbioses are vital for host health, yet little is known about crosskingdom signaling mechanisms that maintain their balance. Ismail et al. demonstrate that mammalian epithelial cells produce a mimic of the bacterial autoinducer, AI-2, in response to secreted bacterial factors and tight-junction disruption that activates quorum sensing in bacteria.
17 Mar 16:33

Gut Microbial Metabolite TMAO Enhances Platelet Hyperreactivity and Thrombosis Risk

by Weifei Zhu, Jill C. Gregory, Elin Org, Jennifer A. Buffa, Nilaksh Gupta, Zeneng Wang, Lin Li, Xiaoming Fu, Yuping Wu, Margarete Mehrabian, R. Balfour Sartor, Thomas M. McIntyre, Roy L. Silverstein, W.H. Wilson Tang, Joseph A. DiDonato, J. Mark Brown, Aldons J. Lusis, Stanley L. Hazen
The gut microbe-dependent metabolite TMAO directly increases platelet hyperreactivity and thrombosis potential in vivo, both of which are important risk factors for development of cardiometabolic disease complications, such as stroke and heart attack.
16 Mar 03:30

Probing Polytopic Membrane Protein–Substrate Interactions by Luminescence Resonance Energy Transfer

by Monika Musial-Siwek, Marcie B. Jaffee and Barbara Imperiali

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Journal of the American Chemical Society
DOI: 10.1021/jacs.5b13426
14 Mar 18:30

An injectable nanoparticle generator enhances delivery of cancer therapeutics

by Rong Xu

Nature Biotechnology. doi:10.1038/nbt.3506

Authors: Rong Xu, Guodong Zhang, Junhua Mai, Xiaoyong Deng, Victor Segura-Ibarra, Suhong Wu, Jianliang Shen, Haoran Liu, Zhenhua Hu, Lingxiao Chen, Yi Huang, Eugene Koay, Yu Huang, Jun Liu, Joe E Ensor, Elvin Blanco, Xuewu Liu, Mauro Ferrari & Haifa Shen

The efficacy of cancer drugs is often limited because only a small fraction of the administered dose accumulates in tumors. Here we report an injectable nanoparticle generator (iNPG) that overcomes multiple biological barriers to cancer drug delivery. The iNPG is a discoidal micrometer-sized particle that can be loaded with chemotherapeutics. We conjugate doxorubicin to poly(L-glutamic acid) by means of a pH-sensitive cleavable linker, and load the polymeric drug (pDox) into iNPG to assemble iNPG-pDox. Once released from iNPG, pDox spontaneously forms nanometer-sized particles in aqueous solution. Intravenously injected iNPG-pDox accumulates at tumors due to natural tropism and enhanced vascular dynamics and releases pDox nanoparticles that are internalized by tumor cells. Intracellularly, pDox nanoparticles are transported to the perinuclear region and cleaved into Dox, thereby avoiding excretion by drug efflux pumps. Compared to its individual components or current therapeutic formulations, iNPG-pDox shows enhanced efficacy in MDA-MB-231 and 4T1 mouse models of metastatic breast cancer, including functional cures in 40–50% of treated mice.

12 Mar 03:15

Targeting the Bacterial Division Protein FtsZ

by Katherine A. Hurley, Thiago M. A. Santos, Gabriella M. Nepomuceno, Valerie Huynh, Jared T. Shaw and Douglas B. Weibel

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.5b01098
12 Mar 02:55

Enzyme-Instructed Self-Assembly of Small d-Peptides as a Multiple-Step Process for Selectively Killing Cancer Cells

by Jie Zhou, Xuewen Du, Natsuko Yamagata and Bing Xu

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Journal of the American Chemical Society
DOI: 10.1021/jacs.5b13541
11 Mar 01:50

Gut Microbial Metabolite TMAO Enhances Platelet Hyperreactivity and Thrombosis Risk

by Weifei Zhu, Jill C. Gregory, Elin Org, Jennifer A. Buffa, Nilaksh Gupta, Zeneng Wang, Lin Li, Xiaoming Fu, Yuping Wu, Margarete Mehrabian, R. Balfour Sartor, Thomas M. McIntyre, Roy L. Silverstein, W.H. Wilson Tang, Joseph A. DiDonato, J. Mark Brown, Aldons J. Lusis, Stanley L. Hazen
The gut microbe-dependent metabolite TMAO directly increases platelet hyperreactivity and thrombosis potential in vivo, both of which are important risk factors for development of cardiometabolic disease complications, such as stroke and heart attack.
11 Mar 01:46

[Report] Schedule-dependent interaction between anticancer treatments

by Sheng-hong Chen
The oncogene MDMX is overexpressed in many cancers, leading to suppression of the tumor suppressor p53. Inhibitors of the oncogene product MDMX therefore might help reactivate p53 and enhance the efficacy of DNA-damaging drugs. However, we currently lack a quantitative understanding of how MDMX inhibition affects the p53 signaling pathway and cell sensitivity to DNA damage. Live cell imaging showed that MDMX depletion triggered two distinct phases of p53 accumulation in single cells: an initial postmitotic pulse, followed by low-amplitude oscillations. The response to DNA damage was sharply different in these two phases; in the first phase, MDMX depletion was synergistic with DNA damage in causing cell death, whereas in the second phase, depletion of MDMX inhibited cell death. Thus a quantitative understanding of signal dynamics and cellular states is important for designing an optimal schedule of dual-drug administration. Authors: Sheng-hong Chen, William Forrester, Galit Lahav
09 Mar 02:57

Peptide based hydrogels for cancer drug release: modulation of stiffness, drug release and proteolytic stability of hydrogels by incorporating D-amino acid residue(s)

Chem. Commun., 2016, 52,5045-5048
DOI: 10.1039/C6CC01744D, Communication
Kingshuk Basu, Abhishek Baral, Shibaji Basak, Ashkan Dehsorkhi, Jayanta Nanda, Debmalya Bhunia, Surajit Ghosh, Valeria Castelletto, Ian W. Hamley, Arindam Banerjee
This is a novel example of tailor-made design of hydrogels for anticancer drug release.
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08 Mar 12:53

On-Demand Targeting: Investigating Biology with Proximity-Directed Chemistry

by Marcus J. C. Long, Jesse R. Poganik and Yimon Aye

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Journal of the American Chemical Society
DOI: 10.1021/jacs.5b12608
07 Mar 19:18

Macrocyclization of Unprotected Peptide Isocyanates

by Alexander A. Vinogradov, Zi-Ning Choo, Kyle A. Totaro and Bradley L. Pentelute

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Organic Letters
DOI: 10.1021/acs.orglett.5b03626
03 Mar 18:52

Preparation and Evaluation of Radiolabeled Antibody Recruiting Small Molecules That Target Prostate-Specific Membrane Antigen for Combined Radiotherapy and Immunotherapy

by Afaf R. Genady, Nancy Janzen, Laura Banevicius, Mahmoud El-Gamal, Mohamed E. El-Zaria and John F. Valliant

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.5b01881
03 Mar 18:26

Multifunctional Coating Improves Cell Adhesion on Titanium by using Cooperatively Acting Peptides

by Mareen Pagel, Rayk Hassert, Torsten John, Klaus Braun, Manfred Wießler, Bernd Abel, Annette G. Beck-Sickinger

Abstract

Promotion of cell adhesion on biomaterials is crucial for the long-term success of a titanium implant. Herein a novel concept is highlighted combining very stable and affine titanium surface adhesive properties with specific cell binding moieties in one molecule. A peptide containing l-3,4-dihydroxyphenylalanine was synthesized and affinity to titanium was investigated. Modification with a cyclic RGD peptide and a heparin binding peptide (HBP) was realized by an efficient on-resin combination of Diels–Alder reaction with inverse electron demand and CuI catalyzed azide–alkyne cycloaddition. The peptide was fluorescently labeled by thiol Michael addition. Conjugating the cyclic RGD and HBP in one peptide gave improved spreading, proliferation, viability, and the formation of well-developed actin cytoskeleton and focal contacts of osteoblast-like cells.

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Let′s stick together: An efficient on-resin combination of a Diels–Alder reaction with inverse electron demand and a CuI catalyzed azide–alkyne cycloaddition is used to link a stable and affine TiO2-binding peptide to two cell adhesive motifs. The multifunctional construct improved the cell adhesion of osteoblast-like cells through the cooperative action of the peptides. DOPA=l-3,4-dihydroxylphenylalanine.

03 Mar 02:26

Structure and Energetic Contributions of a Designed Modular Peptide-Binding Protein with Picomolar Affinity

by Simon Hansen, Dirk Tremmel, Chaithanya Madhurantakam, Christian Reichen, Peer R. E. Mittl and Andreas Plückthun

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Journal of the American Chemical Society
DOI: 10.1021/jacs.6b00099
01 Mar 13:43

Stapled Peptides with γ-Methylated Hydrocarbon Chains for the Estrogen Receptor/Coactivator Interaction

by Thomas E. Speltz, Sean W. Fanning, Christopher G. Mayne, Colin Fowler, Emad Tajkhorshid, Geoffrey L. Greene, Terry W. Moore

Abstract

“Stapled” peptides are typically designed to replace two non-interacting residues with a constraining, olefinic staple. To mimic interacting leucine and isoleucine residues, we have created new amino acids that incorporate a methyl group in the γ-position of the stapling amino acid S5. We have incorporated them into a sequence derived from steroid receptor coactivator 2, which interacts with estrogen receptor α. The best peptide (IC50=89 nm) replaces isoleucine 689 with an S-γ-methyl stapled amino acid, and has significantly higher affinity than unsubstituted peptides (390 and 760 nm). Through X-ray crystallography and molecular dynamics studies, we show that the conformation taken up by the S-γ-methyl peptide minimizes the syn-pentane interactions between the α- and γ-methyl groups.

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Branching out: γ-Branched stapling amino acids were synthesized and incorporated into peptides to produce high-affinity inhibitors of the estrogen receptor/steroid receptor coactivator interaction. Some branched stapled peptides were more effective than the unfunctionalized peptide. The influence of 1,5-interactions on peptide conformation was analyzed by circular dichroism, X-ray crystallography, and molecular dynamics.

25 Feb 17:53

Cytotoxic T Cells Use Mechanical Force to Potentiate Target Cell Killing

by Roshni Basu, Benjamin M. Whitlock, Julien Husson, Audrey Le Floc’h, Weiyang Jin, Alon Oyler-Yaniv, Farokh Dotiwala, Gregory Giannone, Claire Hivroz, Nicolas Biais, Judy Lieberman, Lance C. Kam, Morgan Huse
Cytotoxic T cells exert mechanical force against target cells through the immunological synapse. This potentiates target cell destruction by enhancing the pore-forming activity of the cytolytic molecule perforin.
25 Feb 13:31

A p-Hydroxyphenacyl–Benzothiazole–Chlorambucil Conjugate as a Real-Time-Monitoring Drug-Delivery System Assisted by Excited-State Intramolecular Proton Transfer

by Shrabani Barman, Sourav K. Mukhopadhyay, Sandipan Biswas, Surajit Nandi, Moumita Gangopadhyay, Satyahari Dey, Anakuthil Anoop, N. D. Pradeep Singh

Abstract

Among the well-known phototriggers, the p-hydroxyphenacyl (pHP) group has consistently enabled the very fast, efficient, and high-conversion release of active molecules. Despite this unique behavior, the pHP group has been ignored as a delivery agent, particularly in the area of theranostics, because of two major limitations: Its excitation wavelength is below 400 nm, and it is nonfluorescent. We have overcome these limitations by incorporating a 2-(2′-hydroxyphenyl)benzothiazole (HBT) appendage capable of rapid excited-state intramolecular proton transfer (ESIPT). The ESIPT effect also provided two unique advantages: It assisted the deprotonation of the pHP group for faster release, and it was accompanied by a distinct fluorescence color change upon photorelease. In vitro studies showed that the p-hydroxyphenacyl–benzothiazole–chlorambucil conjugate presents excellent properties, such as real-time monitoring, photoregulated drug delivery, and biocompatibility.

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Let it go… The two major limitations for theranostics of the p-hydroxyphenacyl (pHP) phototrigger were overcome by incorporating a benzothiazole appendage to enable rapid excited-state intramolecular proton transfer (ESIPT; see picture). The ESIPT effect had two key advantages: It assisted the deprotonation of pHP group for faster release of the anticancer drug chlorambucil and led to a fluorescence color change upon photorelease.

24 Feb 16:35

Redirecting immunity via covalently incorporated immunogenic sialic acid on the tumor cell surface

Chem. Sci., 2016, 7,3737-3741
DOI: 10.1039/C5SC04133C, Edge Article
Open Access Open Access
Creative Commons Licence&nbsp This article is licensed under a Creative Commons Attribution 3.0 Unported Licence.
Bijuan Lin, Xuanjun Wu, Hu Zhao, Yunpeng Tian, Jiahuai Han, Jian Liu, Shoufa Han
Anti-tumor immunity was achieved via metabolically incorporated non-self antigen-labelled sialic acid on the tumor surface glycocalyx.
The content of this RSS Feed (c) The Royal Society of Chemistry
23 Feb 19:30

Dual Genetic Encoding of Acetyl-lysine and Non-deacetylatable Thioacetyl-lysine Mediated by Flexizyme

by Hai Xiong, Noah M. Reynolds, Chenguang Fan, Markus Englert, Denton Hoyer, Scott J. Miller, Dieter Söll

Abstract

Acetylation of lysine residues is an important post-translational protein modification. Lysine acetylation in histones and its crosstalk with other post-translational modifications in histone and non-histone proteins are crucial to DNA replication, DNA repair, and transcriptional regulation. We incorporated acetyl-lysine (AcK) and the non-hydrolyzable thioacetyl-lysine (ThioAcK) into full-length proteins in vitro, mediated by flexizyme. ThioAcK and AcK were site-specifically incorporated at different lysine positions into human histone H3, either individually or in pairs. We demonstrate that the thioacetyl group in histone H3 could not be removed by the histone deacetylase sirtuin type 1. This method provides a powerful tool to study protein acetylation and its role in crosstalk between post-translational modifications.

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Director′s cut: The Flexizyme technique is used to incorporate acetyl-lysine and the non-hydrolyzable thioacetyl-lysine into full-length proteins in vitro and site-specifically into human histone H3, either individually or in pairs. The thioacetyl group of the modified histone H3 could not be removed by the histone deacetylase sirtuin.

23 Feb 19:23

Fast and Tight Boronate Formation for Click Bioorthogonal Conjugation

by Burcin Akgun, Dennis G. Hall

Abstract

A new click bioorthogonal reaction system was devised to enable the fast ligation (kON≈340 m−1 s−1) of conjugatable derivatives of a rigid cyclic diol (nopoldiol) and a carefully optimized boronic acid partner, 2-methyl-5-carboxymethylphenylboronic acid. Using NMR and fluorescence spectroscopy studies, the corresponding boronates were found to form reversibly within minutes at low micromolar concentration in water, providing submicromolar equilibrium constant (Keq≈105–106 m−1). Efficient protein conjugation under physiological conditions was demonstrated with model proteins thioredoxin and albumin, and characterized by mass spectrometry and gel electrophoresis.

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A click bioorthogonal reaction system was devised for the fast ligation of conjugatable derivatives of a rigid cyclic diol (nopoldiol) with an optimal boronic acid partner, 2-methyl-5-carboxymethylphenylboronic acid. The resulting boronates form reversibly within minutes at low concentrations in water. Efficient protein conjugation under physiological conditions was demonstrated with model proteins thioredoxin and albumin.

23 Feb 03:24

Aptamer and Antisense-Mediated Two-Dimensional Isolation of Specific Cancer Cell Subpopulations

by Mahmoud Labib, Brenda Green, Reza M. Mohamadi, Adam Mepham, Sharif U. Ahmed, Laili Mahmoudian, I-Hsin Chang, Edward H. Sargent and Shana O. Kelley

TOC Graphic

Journal of the American Chemical Society
DOI: 10.1021/jacs.5b10939
22 Feb 21:35

Inclusion of Strep-tag II in design of antigen receptors for T-cell immunotherapy

by Lingfeng Liu

Nature Biotechnology. doi:10.1038/nbt.3461

Authors: Lingfeng Liu, Daniel Sommermeyer, Alexandra Cabanov, Paula Kosasih, Tyler Hill & Stanley R Riddell

Adoptive immunotherapy with genetically engineered T cells has the potential to treat cancer and other diseases. The introduction of Strep-tag II sequences into specific sites in synthetic chimeric antigen receptors or natural T-cell receptors of diverse specificities provides engineered T cells with a marker for identification and rapid purification, a method for tailoring spacer length of chimeric receptors for optimal function, and a functional element for selective antibody-coated, microbead-driven, large-scale expansion. These receptor designs facilitate cGMP manufacturing of pure populations of engineered T cells for adoptive T-cell therapies and enable in vivo tracking and retrieval of transferred cells for downstream research applications.

22 Feb 16:17

Glycopeptide antibiotic analogs for selective inactivation and two-photon imaging of vancomycin-resistant strains

Chem. Commun., 2016, 52,4667-4670
DOI: 10.1039/C5CC10230H, Communication
Shinya Ariyasu, Pei Chui Too, Jing Mu, Chi Ching Goh, Yichen Ding, Ya Lin Tnay, Edwin Kok Lee Yeow, Liang Yang, Lai Guan Ng, Shunsuke Chiba, Bengang Xing
Theranostic divalent vancomycin systems exhibit selective antibacterial activity against vancomycin-resistant strains and can be applied for two-photon fluorescence imaging.
The content of this RSS Feed (c) The Royal Society of Chemistry
20 Feb 18:14

Selective labelling and eradication of antibiotic-tolerant bacterial populations in Pseudomonas aeruginosa biofilms

by Song Lin Chua

Article

Pathogenic bacteria can aggregate to form biofilms and develop tolerance to antibiotics. Here, the authors use a proteomics approach to study the development of tolerance to the antibiotic colistin in Pseudomonas aeruginosa biofilms, and show that co-treatment with a second compound kills the tolerant cells.

Nature Communications doi: 10.1038/ncomms10750

Authors: Song Lin Chua, Joey Kuok Hoong Yam, Piliang Hao, Sunil S. Adav, May Margarette Salido, Yang Liu, Michael Givskov, Siu Kwan Sze, Tim Tolker-Nielsen, Liang Yang

19 Feb 18:43

Visible-Light-Induced Specific Desulfurization of Cysteinyl Peptide and Glycopeptide in Aqueous Solution

by Xiao-Fei Gao, Jing-Jing Du, Zheng Liu and Jun Guo

TOC Graphic

Organic Letters
DOI: 10.1021/acs.orglett.6b00292