Shared posts

19 Oct 12:17

Novel Electrophilic Scaffold for Imaging of Essential Penicillin-Binding Proteins in Streptococcus pneumoniae

by Shabnam Sharifzadeh, Michael J. Boersma, Ozden Kocaoglu, Alireza Shokri, Clayton L. Brown, Joshua D. Shirley, Malcolm E. Winkler and Erin E. Carlson

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ACS Chemical Biology
DOI: 10.1021/acschembio.7b00614
17 Oct 13:51

The importance of asymmetry in bacteria

New research published in Nature Microbiology has highlighted a protein that functions as a membrane vacuum cleaner and which could be a potential new target for antibiotics.
09 Oct 19:32

Chemistry and Biology of Teixobactin

by Qi Zhang

Abstract

Bacterial resistance to existing drugs is becoming a serious public health issue, urging extensive search for new antibiotics. Teixobactin, a cyclic depsipeptide discovered in a screen of uncultured bacteria, shows potent activity against all the tested Gram-positive bacteria. Remarkably, no teixobactin-resistant bacterial strain has been obtained despite extensive efforts, highlighting the great potential of teixobactin as a lead compound in the fight against antimicrobial resistance (AMR). This review summarizes recent progresses in the understanding of many aspects of teixobactin, including chemical structure, biological activity, biosynthetic pathway, and mode of action. We also discuss the different synthetic strategies in producing teixobactin and its analogues, and the structure–activity relationship (SAR) studies.

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Teixobactin is a cyclic depsipeptide exhibiting potent activity against all the tested Gram-positive bacteria. Remarkably, thus far no teixobactin-resistant bacterial strain has been obtained despite extensive efforts. This Review discusses recent progress in the understanding of many aspects of teixobactin, including biological activity, biosynthetic pathway, mode of action, and the structure–activity relationship studies.

04 Oct 08:35

Don’t let sleeping dogmas lie: new views of peptidoglycan synthesis and its regulation

by Heng Zhao, Vaidehi Patel, John D. Helmann, Tobias Dörr

Summary

Bacterial cell wall synthesis is the target for some of our most powerful antibiotics and has thus been the subject of intense research focus for more than 50 years. Surprisingly, we still lack a fundamental understanding of how bacteria build, maintain and expand their cell wall. Due to technical limitations, directly testing hypotheses about the coordination and biochemistry of cell wall synthesis enzymes or architecture has been challenging, and interpretation of data has therefore often relied on circumstantial evidence and implicit assumptions. A number of recent papers have exploited new technologies, like single molecule tracking and real-time, high resolution temporal mapping of cell wall synthesis processes, to address fundamental questions of bacterial cell wall biogenesis. The results have challenged established dogmas and it is therefore timely to integrate new data and old observations into a new model of cell wall biogenesis in rod-shaped bacteria.

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The cell wall is an essential component of most bacterial cells, and has been a major focus of research for the last 50 years. Despite this intense research, we still have an incomplete understanding of how bacteria construct their cell wall. In this MicroReview, we will summarize important new data generated in the last few years, reexamine some established ideas in the field and propose a new model of cell wall biogenesis in rod-shaped bacteria.

03 Oct 15:03

Molecular architecture of the PBP2–MreC core bacterial cell wall synthesis complex

by Carlos Contreras-Martel

Molecular architecture of the PBP2–MreC core bacterial cell wall synthesis complex

Nature Communications, Published online: 3 October 2017; doi:10.1038/s41467-017-00783-2

Bacterial wall biosynthesis is a complex process that requires the coordination of multiple enzymes. Here, the authors structurally characterize the PBP2:MreC complex involved in peptidoglycan elongation and cross-linking, and demonstrate that its disruption leads to loss of H. pylori shape and inability to sustain growth.

28 Sep 16:43

Targeting Wall Teichoic Acid in Situ with Branched Polyethylenimine Potentiates β-Lactam Efficacy against MRSA

by Melissa A. Foxley, Summer N. Wright, Anh K. Lam, Anthony W. Friedline, Stoffel J. Strange, Min T. Xiao, Erika L. Moen and Charles V. Rice

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ACS Medicinal Chemistry Letters
DOI: 10.1021/acsmedchemlett.7b00285
28 Sep 16:43

Peptidoglycan O-acetylation is functionally related to cell wall biosynthesis and cell division in Streptococcus pneumoniae

by J Bonnet, C Durmort, M Jacq, I Mortier-Barrière, N Campo, MS VanNieuwenhze, YV Brun, C Arthaud, B Gallet, C Moriscot, C Morlot, T Vernet, AM Di Guilmi

Summary

The peptidoglycan is a rigid matrix required to resist turgor pressure and to maintain the cellular shape. It is formed by linear glycan chains composed of N-acetylmuramic acid-(β-1,4)-N-acetylglucosamine (MurNAc-GlcNAc) disaccharides associated through cross-linked peptide stems. The peptidoglycan is continually remodelled by synthetic and hydrolytic enzymes and by chemical modifications, including O-acetylation of MurNAc residues that occurs in most Gram-positive and Gram-negative bacteria. This modification is a powerful strategy developed by pathogens to resist to lysozyme degradation and thus to escape from the host innate immune system but little is known about its physiological function. In this study, we have investigated to what extend peptidoglycan O-acetylation is involved in cell wall biosynthesis and cell division of Streptococcus pneumoniae. We show that O-acetylation driven by Adr protects the peptidoglycan of dividing cells from cleavage by the major autolysin LytA and occurs at the septal site. Our results support a function for Adr in the formation of robust and mature MurNAc O-acetylated peptidoglycan and infer its role in the division of the pneumococcus.

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In this study, we have investigated to what extend peptidoglycan O-acetylation is involved in cell wall biosynthesis and cell division of Streptococcus pneumoniae. We show that O-acetylation driven by Adr protects the peptidoglycan of dividing cells from cleavage by the major autolysin LytA and occurs at the septal site. Our results support a function for Adr in the formation of robust and mature MurNAc O-acetylated peptidoglycan and infer its role in the division of the pneumococcus.

27 Sep 22:25

Natural Products as Platforms To Overcome Antibiotic Resistance

by Sean E. Rossiter, Madison H. Fletcher and William M. Wuest

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Chemical Reviews
DOI: 10.1021/acs.chemrev.7b00283
27 Sep 19:10

Pigeons Can Switch Tasks More Quickly than Humans

The birds' ability to multitask may be attributable to a more densely packed cerebral cortex, scientists propose.
20 Sep 19:15

Fishing for Answers in Human Mycobacterial Infections

Publication date: 19 September 2017
Source:Immunity, Volume 47, Issue 3
Author(s): Miriam Bolz, Joel D. Ernst
Two recent studies (Cambier et al., 2017; Madigan et al., 2017) reveal in vivo functions for specific phenolic glycolipids (PGLs) in the mycobacteria that cause tuberculosis or leprosy. M. tuberculosis (and M. marinum) PGL promotes bacterial spread to growth-permissive macrophages, while M. leprae PGL-1 induces macrophages to cause nerve demyelination characteristic of human leprosy.

Teaser

Two recent studies (Cambier et al., 2017; Madigan et al., 2017) reveal in vivo functions for specific phenolic glycolipids (PGLs) in the mycobacteria that cause tuberculosis or leprosy. M. tuberculosis (and M. marinum) PGL promotes bacterial spread to growth-permissive macrophages, while M. leprae PGL-1 induces macrophages to cause nerve demyelination characteristic of human leprosy.
19 Sep 14:49

Chemistry of Peptidoglycan in Mycobacterium tuberculosis Life Cycle: An off-the-wall Balance of Synthesis and Degradation

by Flavia Squeglia, Alessia Ruggiero, Rita Berisio

Abstract

The cell wall envelope of mycobacteria is structurally distinct from that of both Gram-positive and Gram-negative bacteria. In Mycobacterium tuberculosis, this cell wall has unique structural features and plays a crucial role in drug resistance and macrophage survival under stress conditions. Peptidoglycan is the major constituent of this cell wall, with an important structural role, giving structural strength, and counteracting the osmotic pressure of the cytoplasm. Synthesis of this complex polymer takes place in three stages that occur at three different locations in the cell, from the cytoplasm to the external side of the cell membrane, where polymerization occurs. A fine balance of peptidoglycan synthesis and degradation is responsible for a plethora of molecular mechanisms which are key to the pathogenicity of M. tuberculosis. Enlargement of mycobacterial cells can occur through the synthesis of new peptidoglycan, autolysis of old peptidoglycan, or a combination of both processes. Here, we discuss the chemical aspects of peptidoglycan synthesis and degradation, in relation to metabolic stages of M. tuberculosis. Going from inside the mycobacterial cytoplasm to outside its membrane, we describe the assembly line of peptidoglycan synthesis and polymerization, and continue with its depolymerization events and their consequences on mycobacterial life and resuscitation from dormancy.

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Mycobacterial Peptidoglycan Cell Wall Turnover: A complex assembly line is responsible for the Peptidoglycan wall construction, from the synthesis of Park's nucleotide synthesis inside the cytoplasm to Peptidoglycan polymerization in the periplasmic space. In resuscitation from mycobacterial dormancy, the wall is attacked by RipA and Rpf hydrolases, which produce free muropeptide sensors and wake up mycobacteria from a dormant “comfortably numb” state.

11 Sep 23:33

Enhanced Photobactericidal and Targeting Properties of a Cationic Porphyrin following the Attachment of Polymyxin B

by Florent Le Guern, Vincent Sol, Catherine Ouk, Philippe Arnoux, Céline Frochot and Tan-Sothea Ouk

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Bioconjugate Chemistry
DOI: 10.1021/acs.bioconjchem.7b00516
10 Sep 22:56

Bacterial Cell Size: Multifactorial and Multifaceted

by Corey S. Westfall
Annual Review of Microbiology, Volume 71, Issue 1, Page 499-517, September 2017.
10 Sep 22:55

Uncovering cancer: How enlisting T cells can boost the power of immunotherapy

by Amanda B. Keener

Uncovering cancer: How enlisting T cells can boost the power of immunotherapy

Nature Medicine, Published online: 8 September 2017; doi:10.1038/nm0917-1006

07 Sep 16:54

Poly(2-oxazoline)–Antibiotic Conjugates with Penicillins

by Martin Schmidt, Livia K. Bast, Franziska Lanfer, Lena Richter, Elisabeth Hennes, Rana Seymen, Christian Krumm and Joerg C. Tiller

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Bioconjugate Chemistry
DOI: 10.1021/acs.bioconjchem.7b00424
07 Sep 16:51

Brain Bugs

Neuropharmacologist John Cryan of University College of Cork in Ireland explains the links between the microbiome and the central nervous system.
03 Sep 19:50

Though Much Is Taken, Much Abides: Finding New Antibiotics Using Old Ones

by Paul C. Rosen and Mohammad R. Seyedsayamdost

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Biochemistry
DOI: 10.1021/acs.biochem.7b00782
03 Sep 19:48

Beyond gut feelings: how the gut microbiota regulates blood pressure

by Francine Z. Marques

Beyond gut feelings: how the gut microbiota regulates blood pressure

Nature Reviews Cardiology, Published online: 24 August 2017; doi:10.1038/nrcardio.2017.120

A growing body of evidence supports the role of the gut microbiota in regulating blood pressure. In their Review, Marques and co-workers describe how the gut microbiota and its metabolites act on downstream cellular targets to influence the pathogenesis of hypertension. Novel strategies to modify the gut microbiota might present a new therapeutic avenue to improve health and prevent disease.

01 Sep 13:59

How Microbes May Influence Our Behavior

Researchers are piecing together the links between the gut microbiome and mental health.
01 Sep 12:03

A Bacteria-Laden Shirt That Ventilates in Response to Sweat

Exposure to the body's humidity causes a film of the microbes to change shape, opening flaps in the garment to allow for increased airflow.
30 Aug 18:50

FDA Approves Groundbreaking Gene Therapy for Cancer

The treatment will be sold by Novartis for $475,000.
30 Aug 18:28

Gut bacteria that 'talk' to human cells may lead to new treatments

We have a symbiotic relationship with the trillions of bacteria that live in our bodies—they help us, we help them. It turns out that they even speak the same language. And new research from The Rockefeller University and the Icahn School of Medicine at Mt. Sinai suggests these newly discovered commonalities may open the door to "engineered" gut flora who can have therapeutically beneficial effects on disease.
30 Aug 12:50

Research team identifies mutations key to antibiotic resistance

Two genetic mutations could be key to understanding how bacteria retain antibiotic resistance, according to a team led by University of Idaho researchers.
30 Aug 12:30

Innate immunity: A new way out for lysozyme

by Shimona Starling

Nature Reviews Immunology 17, 532 (2017). doi:10.1038/nri.2017.98

Author: Shimona Starling

Endoplasmic reticulum stress in Paneth cells induces secretory autophagy of lysozyme.

24 Aug 13:41

Change advice on antibiotics with caution

Change advice on antibiotics with caution

Nature Microbiology, Published online: 24 August 2017; doi:10.1038/nmicrobiol.2017.126

The recommendation that antibiotic courses are always completed should be dropped according to a recent analysis. While a welcome addition to discussion on the role of stewardship in tackling resistance, caution should be applied before advice on prescription practices and communication with patients is altered.

23 Aug 22:31

LytM factors affect the recruitment of autolysins to the cell division site in Caulobacter crescentus

by Aleksandra Zielińska, Maria Billini, Andrea Möll, Katharina Kremer, Ariane Briegel, Adrian Izquierdo Martinez, Grant J. Jensen, Martin Thanbichler

Summary

Most bacteria possess a peptidoglycan cell wall that determines their morphology and provides mechanical robustness during osmotic challenges. The biosynthesis of this structure is achieved by a large set of synthetic and lytic enzymes with varying substrate specificities. Although the biochemical functions of these proteins are conserved and well-investigated, the precise roles of individual factors and the regulatory mechanisms coordinating their activities in time and space remain incompletely understood. Here, we comprehensively analyze the autolytic machinery of the alphaproteobacterial model organism Caulobacter crescentus, with a specific focus on LytM-like endopeptidases, soluble lytic transglycosylases and amidases. Our data reveal a high degree of redundancy within each protein family but also specialized functions for individual family members under stress conditions. In addition, we identify two lytic transglycosylases and an amidase as new divisome components that are recruited to midcell at distinct stages of the cell cycle. The midcell localization of these proteins is affected by two LytM factors with degenerate catalytic domains, DipM and LdpF, which may serve as regulatory hubs coordinating the activities of multiple autolytic enzymes during cell constriction and fission respectively. These findings set the stage for in-depth studies of the molecular mechanisms that control peptidoglycan remodeling in C. crescentus.

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Peptidoglycan biosynthesis is mediated by a variety of synthetic and lytic enzymes, whose roles and regulation remain incompletely understood. Here, we comprehensively analyze the autolytic machinery of the alphaproteobacterium Caulobacter crescentus. Our study pinpoints factors critical for viability under stress conditions and identifies three more divisome-associated lytic enzymes. Moreover, it reveals two LytM factors with degenerate catalytic domains as regulatory hubs coordinating the activities of multiple peptidoglycan hydrolases during cell constriction and fission respectively.

21 Aug 22:16

Advances in macrocyclic peptide-based antibiotics

Publication date: 1 June 2018
Source:Bioorganic & Medicinal Chemistry, Volume 26, Issue 10
Author(s): Anatol Luther, Christian Bisang, Daniel Obrecht
Macrocyclic peptide-based natural products have provided powerful new antibiotic drugs, drug candidates, and scaffolds for medicinal chemists as a source of inspiration to design novel antibiotics. While most of those natural products are active mainly against Gram-positive pathogens, novel macrocyclic peptide-based compounds have recently been described, which exhibit potent and specific activity against some of the most problematic Gram-negative ESKAPE pathogens. This mini-review gives an up-date on recent developments.

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21 Aug 22:15

Interspecies nutrient extraction and toxin delivery between bacteria

by Ofer Stempler

Interspecies nutrient extraction and toxin delivery between bacteria

Nature Communications, Published online: 22 August 2017; doi:10.1038/s41467-017-00344-7

Bacteria can exchange nutrients and macromolecules through tubular membranous structures called nanotubes. Here, the authors show that Bacillus subtilis can kill and prey on Bacillus megaterium by delivering a toxin and extracting nutrients in a nanotube-dependent manner.

14 Aug 12:27

Biofilms: Building up the matrix

by Irene Vacca

Nature Reviews Microbiology 15, 512 (2017). doi:10.1038/nrmicro.2017.91

Author: Irene Vacca

Two independent recent studies have revealed how distinct components of the biofilm matrix contribute to its architectural stability and functionality.

11 Aug 18:11

Doctors Advice to Finish Antibiotics Overlooks Resistance

There is little evidence that full treatment durations discourage the development of drug-resistant bacteria.