Shared posts

22 Oct 15:32

Probing the ATP-Binding Pocket of Protein Kinase DYRK1A with Benzothiazole Fragment Molecules

by Ulli Rothweiler, Wenche Stensen, Bjørn Olav Brandsdal, Johan Isaksson, Frederick Alan Leeson, Richard Alan Engh and John S. Mjøen Svendsen
C10714028

gatekeeper F238与inhibitors 的interaction

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.6b01086
21 Oct 03:23

Side Chain Cyclized Aromatic Amino Acids: Great Tools as Local Constraints in Peptide and Peptidomimetic Design

by Olivier Van der Poorten, Astrid Knuhtsen, Daniel Sejer Pedersen, Steven Ballet and Dirk Tourwé
C10714028

可以看一看

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.6b01029
20 Oct 15:44

Sulfamide as Zinc Binding Motif in Small Molecule Inhibitors of Activated Thrombin Activatable Fibrinolysis Inhibitor (TAFIa)

by Nis Halland, Jörg Czech, Werngard Czechtizky, Andreas Evers, Markus Follmann, Markus Kohlmann, Herman A. Schreuder and Christopher Kallus
C10714028

很神奇!居然临近手性中心反转

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.6b01276
12 Jul 00:29

DNA-Encoded Library Screening Identifies Benzo[b][1,4]oxazepin-4-ones as Highly Potent and Monoselective Receptor Interacting Protein 1 Kinase Inhibitors

by Philip A. Harris, Bryan W. King, Deepak Bandyopadhyay, Scott B. Berger, Nino Campobasso, Carol A. Capriotti, Julie A. Cox, Lauren Dare, Xiaoyang Dong, Joshua N. Finger, LaShadric C. Grady, Sandra J. Hoffman, Jae U. Jeong, James Kang, Viera Kasparcova, Ami S. Lakdawala, Ruth Lehr, Dean E. McNulty, Rakesh Nagilla, Michael T. Ouellette, Christina S. Pao, Alan R. Rendina, Michelle C. Schaeffer, Jennifer D. Summerfield, Barbara A. Swift, Rachel D. Totoritis, Paris Ward, Aming Zhang, Daohua Zhang, Robert W. Marquis, John Bertin and Peter J. Gough
C10714028

重点看下!

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.5b01898
30 Jun 16:19

Harnessing Fluorine–Sulfur Contacts and Multipolar Interactions for the Design of p53 Mutant Y220C Rescue Drugs

by Matthias R. Bauer, Rhiannon N. Jones, Matthias G. J. Baud, Rainer Wilcken, Frank M. Boeckler, Alan R. Fersht, Andreas C. Joerger and John Spencer
C10714028

可以看下

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ACS Chemical Biology
DOI: 10.1021/acschembio.6b00315
25 Jun 16:12

A SIRT2-Selective Inhibitor Promotes c-Myc Oncoprotein Degradation and Exhibits Broad Anticancer Activity

by Hui Jing, Jing Hu, Bin He, Yashira L. Negrón Abril, Jack Stupinski, Keren Weiser, Marisa Carbonaro, Ying-Ling Chiang, Teresa Southard, Paraskevi Giannakakou, Robert S. Weiss, Hening Lin
C10714028

激酶不光有磷酸化作用还有蛋白-蛋白相互作用生物功能

(Cancer Cell 29, 297–310; March 14, 2016)
15 Jun 15:46

Protein–Protein Interaction Inhibition (2P2I)-Oriented Chemical Library Accelerates Hit Discovery

by Sabine Milhas, Brigitt Raux, Stéphane Betzi, Carine Derviaux, Philippe Roche, Audrey Restouin, Marie-Jeanne Basse, Etienne Rebuffet, Adrien Lugari, Marion Badol, Rudra Kashyap, Jean-Claude Lissitzky, Cécilia Eydoux, Véronique Hamon, Marie-Edith Gourdel, Sébastien Combes, Pascale Zimmermann, Michel Aurrand-Lions, Thomas Roux, Catherine Rogers, Susanne Müller, Stefan Knapp, Eric Trinquet, Yves Collette, Jean-Claude Guillemot and Xavier Morelli
C10714028

可以仔细看下

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ACS Chemical Biology
DOI: 10.1021/acschembio.6b00286
24 May 15:53

Inducing Protein Degradation as a Therapeutic Strategy

by Craig M. Crews, Gunda Georg and Shaomeng Wang
C10714028

应该看看,了解下

Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.6b00735
30 Apr 03:23

Drug Resistance via Reduced RTK Shedding [Research Articles]

by Miller, M. A., Oudin, M. J., Sullivan, R. J., Wang, S. J., Meyer, A. S., Im, H., Frederick, D. T., Tadros, J., Griffith, L. G., Lee, H., Weissleder, R., Flaherty, K. T., Gertler, F. B., Lauffenburger, D. A.
C10714028

drug resistance

Kinase inhibitor resistance often involves upregulation of poorly understood "bypass" signaling pathways. Here, we show that extracellular proteomic adaptation is one path to bypass signaling and drug resistance. Proteolytic shedding of surface receptors, which can provide negative feedback on signaling activity, is blocked by kinase inhibitor treatment and enhances bypass signaling. In particular, MEK inhibition broadly decreases shedding of multiple receptor tyrosine kinases (RTK), including HER4, MET, and most prominently AXL, an ADAM10 and ADAM17 substrate, thus increasing surface RTK levels and mitogenic signaling. Progression-free survival of patients with melanoma treated with clinical BRAF/MEK inhibitors inversely correlates with RTK shedding reduction following treatment, as measured noninvasively in blood plasma. Disrupting protease inhibition by neutralizing TIMP1 improves MAPK inhibitor efficacy, and combined MAPK/AXL inhibition synergistically reduces tumor growth and metastasis in xenograft models. Altogether, extracellular proteomic rewiring through reduced RTK shedding represents a surprising mechanism for bypass signaling in cancer drug resistance.

Significance: Genetic, epigenetic, and gene expression alterations often fail to explain adaptive drug resistance in cancer. This work presents a novel post-translational mechanism of such resistance: Kinase inhibitors, particularly targeting MAPK signaling, increase tumor cell surface receptor levels due to widely reduced proteolysis, allowing tumor signaling to circumvent intended drug action. Cancer Discov; 6(4); 382–99. ©2016 AACR.

This article is highlighted in the In This Issue feature, p. 331

28 Apr 15:42

[Research Articles] MDM2 inhibition rescues neurogenic and cognitive deficits in a mouse model of fragile X syndrome

by Li, Y., Stockton, M. E., Bhuiyan, I., Eisinger, B. E., Gao, Y., Miller, J. L., Bhattacharyya, A., Zhao, X.

Fragile X syndrome, the most common form of inherited intellectual disability, is caused by loss of the fragile X mental retardation protein (FMRP). However, the mechanism remains unclear, and effective treatment is lacking. We show that loss of FMRP leads to activation of adult mouse neural stem cells (NSCs) and a subsequent reduction in the production of neurons. We identified the ubiquitin ligase mouse double minute 2 homolog (MDM2) as a target of FMRP. FMRP regulates Mdm2 mRNA stability, and loss of FMRP resulted in elevated MDM2 mRNA and protein. Further, we found that increased MDM2 expression led to reduced P53 expression in adult mouse NSCs, leading to alterations in NSC proliferation and differentiation. Treatment with Nutlin-3, a small molecule undergoing clinical trials for treating cancer, specifically inhibited the interaction of MDM2 with P53, and rescued neurogenic and cognitive deficits in FMRP-deficient mice. Our data reveal a potential regulatory role for FMRP in the balance between adult NSC activation and quiescence, and identify a potential new treatment for fragile X syndrome.

19 Apr 16:10

Stacking with No Planarity?

by Hakan Gunaydin and Michael D. Bartberger
C10714028

饱和脂肪环替代芳环,不影响stacking effect,效果甚至更好!!!

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ACS Medicinal Chemistry Letters
DOI: 10.1021/acsmedchemlett.6b00099
17 Apr 15:41

The importance of p53 pathway genetics in inherited and somatic cancer genomes

by Giovanni Stracquadanio

Nature Reviews Cancer 16, 251 (2016). doi:10.1038/nrc.2016.15

Authors: Giovanni Stracquadanio, Xuting Wang, Marsha D. Wallace, Anna M. Grawenda, Ping Zhang, Juliet Hewitt, Jorge Zeron-Medina, Francesc Castro-Giner, Ian P. Tomlinson, Colin R. Goding, Kamil J. Cygan, William G. Fairbrother, Laurent F. Thomas, Pål Sætrom, Federica Gemignani, Stefano Landi, Benjamin Schuster-Böckler, Douglas A. Bell & Gareth L. Bond

Decades of research have shown that mutations in the p53 stress response pathway affect the incidence of diverse cancers more than mutations in other pathways. However, most evidence is limited to somatic mutations and rare inherited mutations. Using newly abundant genomic data, we demonstrate that

13 Apr 15:55

Pyrazolylamine Derivatives Reveal the Conformational Switching between Type I and Type II Binding Modes of Anaplastic Lymphoma Kinase (ALK)

by Chih-Hsiang Tu, Wen-Hsing Lin, Yi-Hui Peng, Tsu Hsu, Jian-Sung Wu, Chun-Yu Chang, Cheng-Tai Lu, Ping-Chiang Lyu, Chuan Shih, Weir-Torn Jiaang and Su-Ying Wu
C10714028

可以仔细看下,工作还是挺全面的,但最好等晶体结构出来

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.6b00106
10 Apr 12:06

Discovery of an Orally Active and Liver-Targeted Prodrug of 5-Fluoro-2′-Deoxyuridine for the Treatment of Hepatocellular Carcinoma

by Youmei Peng, Wenquan Yu, Ertong Li, Jinfeng Kang, Yafeng Wang, Qinghua Yang, Bingjie Liu, Jingmin Zhang, Longyu Li, Jie Wu, Jinhua Jiang, Qingduan Wang and Junbiao Chang
C10714028

肝癌的治疗:抗代谢药物(核苷类)

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.5b01807
23 Mar 16:28

Bcl-2/MDM2 Dual Inhibitors Based on Universal Pyramid-Like α-Helical Mimetics

by Ziqian Wang, Ting Song, Yingang Feng, Zongwei Guo, Yudan Fan, Wenjie Xu, Lu Liu, Anhui Wang and Zhichao Zhang
C10714028

自己之前做过MDM2,组里又有人做过BCL2:可是自己从来没想过这两者的关联。还是生物背景太差。

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.5b01913
23 Mar 15:25

Integrating Everything: The Molecule Selection Toolkit, a System for Compound Prioritization in Drug Discovery

by David J. Cummins and Michael A. Bell
C10714028

公司的综述都是很好的,应该仔细研究

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.5b01338
21 Mar 16:12

Selective Targeting of the KRAS G12C Mutant: Kicking KRAS When It’s Down

by G. Aaron Hobbs, Alfred Wittinghofer, Channing J. Der
C10714028

可以仔细看下

Two recent studies evaluated a small molecule that specifically binds to and inactivates the KRAS G12C mutant. The new findings argue that the perception that mutant KRAS is persistently frozen in its active GTP-bound form may not be accurate.
21 Mar 15:45

A SIRT2-Selective Inhibitor Promotes c-Myc Oncoprotein Degradation and Exhibits Broad Anticancer Activity

by Hui Jing, Jing Hu, Bin He, Yashira L. Negrón Abril, Jack Stupinski, Keren Weiser, Marisa Carbonaro, Ying-Ling Chiang, Teresa Southard, Paraskevi Giannakakou, Robert S. Weiss, Hening Lin
C10714028

FGFR4中好像也提到了这个c-Myc

Jing et al. develop a thiomyristoyl lysine compound, TM, as a potent SIRT2-specific inhibitor with broad anticancer activity but little effect on non-cancerous cells. SIRT2 inhibition promotes c-Myc ubiquitination and degradation, suggesting the therapeutic potential of TM to target certain c-Myc-driven cancers.
20 Mar 15:47

Activation Mechanism of Oncogenic Deletion Mutations in BRAF, EGFR, and HER2

by Scott A. Foster, Daniel M. Whalen, Ayşegül Özen, Matthew J. Wongchenko, JianPing Yin, Ivana Yen, Gabriele Schaefer, John D. Mayfield, Juliann Chmielecki, Philip J. Stephens, Lee A. Albacker, Yibing Yan, Kyung Song, Georgia Hatzivassiliou, Charles Eigenbrot, Christine Yu, Andrey S. Shaw, Gerard Manning, Nicholas J. Skelton, Sarah G. Hymowitz, Shiva Malek
C10714028

等PDB文件出来了可以仔细研究下

Foster et al. show that oncogenic in-frame deletions of BRAF, HER2, and EGFR restrain the C helix (αC) in a fixed “in” active conformation, resulting in resistance to commonly used αC “out” inhibitors, and that five amino acid deletion provides optimal kinase activation.
20 Mar 14:51

The cellular origins of drug resistance in cancer

by Geoffrey R Oxnard

Nature Medicine 22, 232 (2016). doi:10.1038/nm.4058

Author: Geoffrey R Oxnard

Two new studies show that mechanisms of acquired resistance to targeted therapy in lung cancer do not necessarily pre-exist in resistant subclones. Instead, some cancers may harbor the potential to acquire a variety of drug-resistance mechanisms after response to targeted therapy.

01 Mar 15:48

Recent Progress on Bile Acid Receptor Modulators for Treatment of Metabolic Diseases

by Yanping Xu
C10714028

FGF19好像和这个有关!?

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.5b00342
19 Jan 00:55

Discovery of oxathiapiprolin, a new oomycete fungicide that targets an oxysterol binding protein

Publication date: 1 February 2016
Source:Bioorganic & Medicinal Chemistry, Volume 24, Issue 3
Author(s): Robert J. Pasteris, Mary Ann Hanagan, John J. Bisaha, Bruce L. Finkelstein, Lisa E. Hoffman, Vann Gregory, John L. Andreassi, James A. Sweigard, Boris A. Klyashchitsky, Yewande T. Henry, Richard A. Berger
Oxathiapiprolin is the first member of a new class of piperidinyl thiazole isoxazoline fungicides with exceptional activity against plant diseases caused by oomycete pathogens. It acts via inhibition of a novel fungal target—an oxysterol binding protein—resulting in excellent preventative, curative and residual efficacy against key diseases of grapes, potatoes and vegetables. Oxathiapiprolin is being developed globally as DuPont™ Zorvec™ disease control with first registration and sales anticipated in 2015. The discovery, synthesis, optimization and biological efficacy are presented.

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18 Jan 15:44

C ring may be dispensable for β-carboline: Design, synthesis, and bioactivities evaluation of tryptophan analog derivatives based on the biosynthesis of β-carboline alkaloids

C10714028

这种逆向思维;拆一个环,又关一个环。

Publication date: 1 February 2016
Source:Bioorganic & Medicinal Chemistry, Volume 24, Issue 3
Author(s): Yuanqiong Huang, Yongxian Liu, Yuxiu Liu, Hongjian Song, Qingmin Wang
According to our previous work and the latest research on the biosynthesis of β-carboline, and using the reverse thinking strategy, tryptophan, the biosynthesis precursor of β-carboline alkaloids, and their derivatives were synthesized, and their biological activities and structure–activity relationships were studied. This bioassay showed that these compounds exhibited good inhibitory activities against tobacco mosaic virus (TMV); especially (S)-2-amino-3-(1H-indol-3-yl)-N-octylpropanamide (4) (63.3±2.1%, 67.1±1.9%, 68.7±1.3%, and 64.5±3.1%, 500μg/mL) exhibited the best antiviral activity both in vitro and in vivo. Compound 4 was chosen for the field trials and the acute oral toxicity test, the results showed that the compound exhibited good anti-TMV activity in the field and low acute oral toxicity. We also found that these compounds showed antifungal activities and insecticidal activities.

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06 Jan 16:34

Selective Inhibition of CBX6: A Methyllysine Reader Protein in the Polycomb Family

by Natalia Milosevich, Michael C. Gignac, James McFarlane, Chakravarthi Simhadri, Shanti Horvath, Kevin D. Daze, Caitlin S. Croft, Aman Dheri, Taylor T. H. Quon, Sarah F. Douglas, Jeremy E. Wulff, Irina Paci and Fraser Hof

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ACS Medicinal Chemistry Letters
DOI: 10.1021/acsmedchemlett.5b00378
06 Jan 16:33

Pyridones as Highly Selective, Noncovalent Inhibitors of T790M Double Mutants of EGFR

by Marian C. Bryan, Daniel J. Burdick, Bryan K. Chan, Yuan Chen, Saundra Clausen, Jennafer Dotson, Charles Eigenbrot, Richard Elliott, Emily J. Hanan, Robert Heald, Philip Jackson, Hank La, Michael Lainchbury, Shiva Malek, Sam E. Mann, Hans E. Purkey, Gabriele Schaefer, Stephen Schmidt, Eileen Seward, Steve Sideris, Shumei Wang, Ivana Yen, Christine Yu and Timothy P. Heffron
C10714028

后面可以看下这个的co-crystal结构,感觉这个地方可关环的地方很多

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ACS Medicinal Chemistry Letters
DOI: 10.1021/acsmedchemlett.5b00428
03 Jan 14:59

A Designed Inhibitor of p53 Aggregation Rescues p53 Tumor Suppression in Ovarian Carcinomas

C10714028

p53是怎样相互聚合的,又应该怎样设计抑制剂来破坏这个作用呢?

Publication date: 11 January 2016
Source:Cancer Cell, Volume 29, Issue 1
Author(s): Alice Soragni, Deanna M. Janzen, Lisa M. Johnson, Anne G. Lindgren, Anh Thai-Quynh Nguyen, Ekaterina Tiourin, Angela B. Soriaga, Jing Lu, Lin Jiang, Kym F. Faull, Matteo Pellegrini, Sanaz Memarzadeh, David S. Eisenberg
Half of all human cancers lose p53 function by missense mutations, with an unknown fraction of these containing p53 in a self-aggregated amyloid-like state. Here we show that a cell-penetrating peptide, ReACp53, designed to inhibit p53 amyloid formation, rescues p53 function in cancer cell lines and in organoids derived from high-grade serous ovarian carcinomas (HGSOC), an aggressive cancer characterized by ubiquitous p53 mutations. Rescued p53 behaves similarly to its wild-type counterpart in regulating target genes, reducing cell proliferation and increasing cell death. Intraperitoneal administration decreases tumor proliferation and shrinks xenografts in vivo. Our data show the effectiveness of targeting a specific aggregation defect of p53 and its potential applicability to HGSOCs.

Graphical abstract

image

Teaser

Using p53-mutant, high-grade, serous ovarian carcinoma as model systems, Soragni et al. show that a cell-penetrating peptide designed to inhibit p53 amyloid formation rescues p53 functions and reduces in vivo xenograft growth and metastasis.
23 Dec 15:33

A Pyrazolo[3,4-d]pyrimidin-4-amine Derivative Containing an Isoxazole Moiety Is a Selective and Potent Inhibitor of RET Gatekeeper Mutants

by Hojong Yoon, Yeonui Kwak, Seunghye Choi, Hanna Cho, Nam Doo Kim and Taebo Sim
C10714028

通过增加与Lys758(基本每个激酶都有的一个残基)的氢键作用居然还有好的选择性!unbeliveable

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.5b01522
23 Dec 01:02

Studies on Aryl-Substituted Phenylalanines: Synthesis, Activity, and Different Binding Modes at AMPA Receptors

by Ewa Szymanska, Karla Frydenvang, Darryl S. Pickering, Christian Krintel, Birgitte Nielsen, Ayesheh Kooshki, Linda G. Zachariassen, Lars Olsen, Jette S. Kastrup and Tommy N. Johansen
C10714028

这么像居然,居然,结合模式不同!!!

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.5b01666
22 Dec 15:15

Hope and Disappointment: Covalent Inhibitors to Overcome Drug Resistance in Non-Small Cell Lung Cancer

by Julian Engel, Jonas Lategahn and Daniel Rauh
C10714028

共价抑制剂耐药:靶蛋白共价结合位点突变

ACS Medicinal Chemistry Letters
DOI: 10.1021/acsmedchemlett.5b00475
12 Nov 16:16

SAR Exploration Guided by LE and Fsp3: Discovery of a Selective and Orally Efficacious RORγ Inhibitor

by Kazuyuki Hirata, Masayuki Kotoku, Noriyoshi Seki, Takaki Maeba, Katsuya Maeda, Shintaro Hirashima, Takayuki Sakai, Shingo Obika, Akimi Hori, Yasunori Hase, Takayuki Yamaguchi, Yoshiaki Katsuda, Takahiro Hata, Naoki Miyagawa, Kojo Arita, Yukihiro Nomura, Kota Asahina, Yusuke Aratsu, Masafumi Kamada, Tsuyoshi Adachi, Masato Noguchi, Satoki Doi, Paul Crowe, Erin Bradley, Ruo Steensma, Haiyan Tao, Morgan Fenn, Robert Babine, Xiaolin Li, Scott Thacher, Hiromasa Hashimoto and Makoto Shiozaki
C10714028

Fsp3 concept

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ACS Medicinal Chemistry Letters
DOI: 10.1021/acsmedchemlett.5b00253