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10 Apr 19:45

Stereochemical plasticity modulates cooperative binding in a CoII12L6 cuboctahedron

by Felix J. Rizzuto

Nature Chemistry. doi:10.1038/nchem.2758

Authors: Felix J. Rizzuto & Jonathan R. Nitschke

An interconverting system of three distinct stereoisomers of a cuboctahedral CoII-based cage is able to regulate the binding affinities of large anionic guests. Through cooperative templation with fullerene guests, the cage converts into a desymmetrized cage that in turn exhibits positive cooperativity in binding of an icosahedral anion; this interaction is anti-cooperative in the fullerene-free parent.

07 Apr 07:07

Propellanes—From a Chemical Curiosity to “Explosive” Materials and Natural Products

Propellanes—From a Chemical Curiosity to “Explosive” Materials and Natural Products

Exploding class: Propellanes are a unique class of compounds with well over 10 000 members having inverted tetrahedral carbon atoms at their bridgehead positions that are linked through a weak single bond. These propeller-type compounds are not only structurally interesting, they also exhibit unusual reactivities. This Review highlights their syntheses and applications in material sciences, natural product synthesis, and medicinal chemisty.

[Review]
Alicia M. Dilmaç, Eduard Spuling, Armin de Meijere, Stefan Bräse
Angew. Chem. Int. Ed., April 06, 2017, https://doi.org/10.1002/anie.201603951 Read article

06 Apr 19:38

[Research Article] Unequivocal determination of complex molecular structures using anisotropic NMR measurements

by Yizhou Liu
Assignment of complex molecular structures from nuclear magnetic resonance (NMR) data can be prone to interpretational mistakes. Residual dipolar couplings and residual chemical shift anisotropy provide a spatial view of the relative orientations between bonds and chemical shielding tensors, respectively, regardless of separation. Consequently, these data constitute a reliable reporter of global structural validity. Anisotropic NMR parameters can be used to evaluate investigators’ structure proposals or structures generated by computer-assisted structure elucidation. Application of the method to several complex structure assignment problems shows promising results that signal a potential paradigm shift from conventional NMR data interpretation, which may be of particular utility for compounds not amenable to x-ray crystallography. Authors: Yizhou Liu, Josep Saurí, Emily Mevers, Mark W. Peczuh, Henk Hiemstra, Jon Clardy, Gary E. Martin, R. Thomas Williamson
06 Apr 13:06

Hybrid[4]arenes with anthracene units and tuneable cavities

New J. Chem., 2017, 41,3387-3391
DOI: 10.1039/C7NJ00039A, Paper
Tomasz Boinski, Agnieszka Szumna
Acid catalyzed condensation between tetramethoxyanthracenes and formaldehyde in the presence of additional benzene-based building blocks leads to hybrid macrocyclic products that are further modified by the Diels-Alder reaction with benzyne to obtain macrocycles with expanded cavities.
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05 Apr 15:03

Prebiotic synthesis of aminooxazoline-5[prime or minute]-phosphates in water by oxidative phosphorylation

Chem. Commun., 2017, 53,4919-4921
DOI: 10.1039/C7CC02183F, Communication
C. Fernandez-Garcia, N. M. Grefenstette, M. W. Powner
A novel strategy for aminooxazoline-5[prime or minute]-phosphate synthesis in water from prebiotic feedstocks, which is generationally linked to Strecker synthesis of proteinogenic amino acids.
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04 Apr 15:11

A Molecular Propeller with Three Nanohoop Blades: Synthesis, Characterization, and Solid-State Packing

A Molecular Propeller with Three Nanohoop Blades: Synthesis, Characterization, and Solid‐State Packing

Nanohoops propel ahead: A triptycene-based molecular propeller with three nanohoop blades was synthesized by a three-fold intramolecular bisboronate homocoupling and subsequent reductive aromatization. Such nanopropeller molecules pack into a lamellar hexagonal structure with 11 Å-diameter channels that run perpendicularly to the layers.

[Communication]
Penghao Li, Lev N. Zakharov, Ramesh Jasti
Angew. Chem. Int. Ed., April 04, 2017, https://doi.org/10.1002/anie.201700935 Read article

28 Mar 20:02

Electron transfer between anatase TiO2 and an O2 molecule directly observed by atomic force microscopy [Chemistry]

by Martin Setvin, Jan Hulva, Gareth S. Parkinson, Michael Schmid, Ulrike Diebold
Activation of molecular oxygen is a key step in converting fuels into energy, but there is precious little experimental insight into how the process proceeds at the atomic scale. Here, we show that a combined atomic force microscopy/scanning tunneling microscopy (AFM/STM) experiment can both distinguish neutral O2 molecules in the...
28 Mar 16:01

A Reinterpretation of the Crystal Structure Analysis of [K(crypt-222)]+CF3−: No Proof for the Trifluoromethanide Ion

by Sabine Becker, Peter Müller

Abstract

Critically discussing and, if necessary, questioning results presented by other researchers has always been a vitally important process in science. Only through fruitful discourse does science arrive at broadly accepted hypotheses that finally become what we accept as scientific truth. In the spirit of this time-honored tradition, we have examined the crystal structure as well as X-ray diffraction data of the proposed compound [K(crypt-222)]+CF3, which has recently been published. We arrived at the conclusion that the claim of the authors to have successfully and unambiguously characterized the ionic [K(crypt-222)]+CF3 through single-crystal X-ray diffraction is not sustainable. Even though it is possible that the original authors have indeed encountered the proposed species, the purpose of this report is to point out that the original authors cannot use the presented crystallographic data and model as proof for the existence of [K(crypt-222)]+CF3. The reason for our conclusion is two-fold: firstly, the crystal structure was not refined to established standards of good crystallographic practice and secondly, even if best practices of structure determination are employed, the submitted diffraction data do not allow establishing conclusively the true nature of the compound at hand. Recognizing that this gives charge unbalance we have not resolved, we nevertheless suggest an alternative molecular model, [K(crypt-222)]⋅CHF3, to demonstrate the ambiguity of the diffraction data submitted by the original authors. However, because of this ambiguity, it is important to point out that the purpose of this report is not (and cannot be) the determination of the true nature of the compound at hand; we would merely like to demonstrate that an alternative interpretation of the original diffraction data is possible and, hence, that the conclusion drawn by the original authors is not unambiguously supported by their own data.

Thumbnail image of graphical abstract

Playing devil's advocate: The recently published crystal structure of [K(crypt-222)]+CF3 is put to the test and its scientific impact is evaluated by a comparison with the alternative refinement model of [K(crypt-222)]⋅CHF3.

27 Mar 16:31

Twisted Macrocycles with Folded ortho-Phenylene Subunits

by Zacharias J. Kinney and C. Scott Hartley

TOC Graphic

Journal of the American Chemical Society
DOI: 10.1021/jacs.7b00149
25 Mar 11:31

Expanded Rosarin: A Versatile Fullerene (C60) Receptor

by Xian-Sheng Ke, Taeyeon Kim, James T. Brewster, Vincent M. Lynch, Dongho Kim and Jonathan L. Sessler

TOC Graphic

Journal of the American Chemical Society
DOI: 10.1021/jacs.7b00735
24 Mar 18:40

A Metallo-molecular Cage That Can Close the Apertures with Coordination Bonds

by Shigehisa Akine, Masato Miyashita and Tatsuya Nabeshima

TOC Graphic

Journal of the American Chemical Society
DOI: 10.1021/jacs.7b00840
23 Mar 06:06

Design of Na+-Selective Fluorescent Probes: A Systematic Study of the Na+-Complex Stability and the Na+/K+ Selectivity in Acetonitrile and Water

by Thomas Schwarze, Holger Müller, Darya Schmidt, Janine Riemer, Hans-Jürgen Holdt
Thumbnail image of graphical abstract

Na+ is one of the top analytes in the life sciences. Therefore, the development of easily accessible and highly Na+ selective fluorescent tools to monitor extra- or intracellular Na+ levels by fluorescence enhancement is still a challenge. Here, we report easily synthesizable fluorescent probes for Na+ made by “click” chemistry. These fluorescent probes show tunable fluorescence emission wavelengths, dissociation constants, and different Na+/K+ selectivities in CH3CN and H2O. More information can be found in the Full Paper by H.-J. Holdt et al. (DOI: 10.1002/chem.201605986).

22 Mar 05:52

Nonribosomal Peptide Synthesis—Principles and Prospects

Nonribosomal Peptide Synthesis—Principles and Prospects

Size does not matter: Nonribosomal peptides (NRPs) are assembled by large multienzyme machineries and represent a structurally highly diverse class of natural products with various bioactivities. This Review provides a thorough overview of NRPs, including their bioactivities, biosynthesis pathways, and their structural variation through biocombinatorial approaches.

[Review]
Roderich D. Süssmuth, Andi Mainz
Angew. Chem. Int. Ed., March 21, 2017, https://doi.org/10.1002/anie.201609079 Read article

21 Mar 19:56

Chiral Sugars Drive Enantioenrichment in Prebiotic Amino Acid Synthesis

by Alexander J. Wagner, Dmitry Yu. Zubarev, Alán Aspuru-Guzik and Donna G. Blackmond

TOC Graphic

ACS Central Science
DOI: 10.1021/acscentsci.7b00085
21 Mar 17:02

Mechano- and Thermoresponsive Photoluminescent Supramolecular Polymer

by Anna Lavrenova, Diederik W. R. Balkenende, Yoshimitsu Sagara, Stephen Schrettl, Yoan C. Simon and Christoph Weder

TOC Graphic

Journal of the American Chemical Society
DOI: 10.1021/jacs.7b00342
20 Mar 19:46

Nanomachines: A light-powered clockwork

by Chenfeng Ke

Nature Nanotechnology. doi:10.1038/nnano.2017.44

Author: Chenfeng Ke

An organogel is made of molecular motors and modulators that act cooperatively to perform a full mechanical cycle of contraction and expansion at the macroscale.

20 Mar 19:46

Dual-light control of nanomachines that integrate motor and modulator subunits

by Justin T. Foy

Nature Nanotechnology. doi:10.1038/nnano.2017.28

Authors: Justin T. Foy, Quan Li, Antoine Goujon, Jean-Rémy Colard-Itté, Gad Fuks, Emilie Moulin, Olivier Schiffmann, Damien Dattler, Daniel P. Funeriu & Nicolas Giuseppone

A current challenge in the field of artificial molecular machines is the synthesis and implementation of systems that can produce useful work when fuelled with a constant source of external energy. The first experimental achievements of this kind consisted of machines with continuous unidirectional rotations and translations that make use of ‘Brownian ratchets’ to bias random motions. An intrinsic limitation of such designs is that an inversion of directionality requires heavy chemical modifications in the structure of the actuating motor part. Here we show that by connecting subunits made of both unidirectional light-driven rotary motors and modulators, which respectively braid and unbraid polymer chains in crosslinked networks, it becomes possible to reverse their integrated motion at all scales. The photostationary state of the system can be tuned by modulation of frequencies using two irradiation wavelengths. Under this out-of-equilibrium condition, the global work output (measured as the contraction or expansion of the material) is controlled by the net flux of clockwise and anticlockwise rotations between the motors and the modulators.

18 Mar 19:10

Thiophene-fused dithiaoctaphyrins: [small pi]-system switching between cross-conjugated and macrocyclic [small pi]-networks

Chem. Commun., 2017, 53,5091-5094
DOI: 10.1039/C7CC01273J, Communication
Tomohiro Higashino, Atsushi Kumagai, Hiroshi Imahori
We synthesized for the first time octaphyrins with a dithieno[3,4-b:3[prime or minute],4[prime or minute]-d]thiophene core as thiophene-fused dithiaoctaphyrins with a cross-conjugated structure.
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18 Mar 18:06

[Report] Structures of the cyanobacterial circadian oscillator frozen in a fully assembled state

by Joost Snijder
Cyanobacteria have a robust circadian oscillator, known as the Kai system. Reconstituted from the purified protein components KaiC, KaiB, and KaiA, it can tick autonomously in the presence of adenosine 5′-triphosphate (ATP). The KaiC hexamers enter a natural 24-hour reaction cycle of autophosphorylation and assembly with KaiB and KaiA in numerous diverse forms. We describe the preparation of stoichiometrically well-defined assemblies of KaiCB and KaiCBA, as monitored by native mass spectrometry, allowing for a structural characterization by single-particle cryo–electron microscopy and mass spectrometry. Our data reveal details of the interactions between the Kai proteins and provide a structural basis to understand periodic assembly of the protein oscillator. Authors: Joost Snijder, Jan M. Schuller, Anika Wiegard, Philip Lössl, Nicolas Schmelling, Ilka M. Axmann, Jürgen M. Plitzko, Friedrich Förster, Albert J. R. Heck
17 Mar 05:49

A Liquid-Crystalline Phenylene-Based Shape-Persistent Molecular Spoked Wheel

by Alissa Idelson, Christopher Sterzenbach, Stefan-S. Jester, Carsten Tschierske, Ute Baumeister and Sigurd Höger

TOC Graphic

Journal of the American Chemical Society
DOI: 10.1021/jacs.6b13020
16 Mar 13:06

Total synthesis of mycobacterial arabinogalactan containing 92 monosaccharide units

by Yong Wu

Total synthesis of mycobacterial arabinogalactan containing 92 monosaccharide units

Nature Communications, Published online: 16 March 2017; doi:10.1038/ncomms14851

Due to the vast number of potential isomers, the chemical synthesis of large carbohydrates is challenging. Here the authors report the synthesis of mycobacterial arabinogalactan, a biologically important natural product composed of 92 monosaccharide units, the largest synthetic polysaccharide to date.

14 Mar 20:42

Previously unknown class of metalorganic compounds revealed in meteorites [Chemistry]

by Alexander Ruf, Basem Kanawati, Norbert Hertkorn, Qing–Zhu Yin, Franco Moritz, Mourad Harir, Marianna Lucio, Bernhard Michalke, Joshua Wimpenny, Svetlana Shilobreeva, Basil Bronsky, Vladimir Saraykin, Zelimir Gabelica, Regis D. Gougeon, Eric Quirico, Stefan Ralew, Tomasz Jakubowski, Henning Haack, Michael Gonsior, Peter Jenniskens, Nancy W. Hinman, Philippe Schmitt–Kopplin
The rich diversity and complexity of organic matter found in meteorites is rapidly expanding our knowledge and understanding of extreme environments from which the early solar system emerged and evolved. Here, we report the discovery of a hitherto unknown chemical class, dihydroxymagnesium carboxylates [(OH)2MgO2CR]−, in meteoritic soluble organic matter. High...
14 Mar 19:25

A Dimeric Bis(melamine)-Substituted Bispidine for Efficient Transmembrane H+/Cl− Cotransport

A Dimeric Bis(melamine)‐Substituted Bispidine for Efficient Transmembrane H+/Cl− Cotransport

A pH-gated dimer of bis(melamine)-substituted bispidine is reported (see picture). It is an efficient cotransporter of H+/Cl across the lipid bilayer membrane.

[Communication]
Sopan Valiba Shinde, Pinaki Talukdar
Angew. Chem. Int. Ed., March 09, 2017, https://doi.org/10.1002/anie.201700803 Read article

09 Mar 08:58

Combined Analysis of NMR and MS Spectra (CANMS)

Combined Analysis of NMR and MS Spectra (CANMS)

Complexity is no longer a problem: A model-free isotopomer analysis of 13C-enriched biological cell extracts has been developed. The combination of NMR and MS data in a single analysis enables a highly specific and accurate determination of 13C isotopomers from a complex mixture of metabolites, which can be used for the interpretation of metabolic pathways.

[Communication]
Mei Chong, Anusha Jayaraman, Silvia Marin, Vitaly Selivanov, Pedro R. de Atauri Carulla, Daniel A. Tennant, Marta Cascante, Ulrich L. Günther, Christian Ludwig
Angew. Chem. Int. Ed., March 08, 2017, DOI: 10.1002/anie.201611634. Read article

08 Mar 09:39

Helically Coiled Graphene Nanoribbons

Helically Coiled Graphene Nanoribbons

Made into ribbons: Helicene-like graphene nanoribbons (HGNR) have been prepared through a regioselective photochemical cyclodehydrochlorination (CDHC) reaction from a polychlorinated polyphenylene precursor.

[Communication]
Maxime Daigle, Dandan Miao, Andrea Lucotti, Matteo Tommasini, Jean-François Morin
Angew. Chem. Int. Ed., March 07, 2017, DOI: 10.1002/anie.201611834. Read article

02 Mar 20:28

[Review] The atom, the molecule, and the covalent organic framework

by Christian S. Diercks
Just over a century ago, Lewis published his seminal work on what became known as the covalent bond, which has since occupied a central role in the theory of making organic molecules. With the advent of covalent organic frameworks (COFs), the chemistry of the covalent bond was extended to two- and three-dimensional frameworks. Here, organic molecules are linked by covalent bonds to yield crystalline, porous COFs from light elements (boron, carbon, nitrogen, oxygen, and silicon) that are characterized by high architectural and chemical robustness. This discovery paved the way for carrying out chemistry on frameworks without losing their porosity or crystallinity, and in turn achieving designed properties in materials. The recent union of the covalent and the mechanical bond in the COF provides the opportunity for making woven structures that incorporate flexibility and dynamics into frameworks. Authors: Christian S. Diercks, Omar M. Yaghi
01 Mar 19:26

Evidence for early life in Earth’s oldest hydrothermal vent precipitates

by Matthew S. Dodd

Evidence for early life in Earth’s oldest hydrothermal vent precipitates

Nature 543, 7643 (2017). doi:10.1038/nature21377

Authors: Matthew S. Dodd, Dominic Papineau, Tor Grenne, John F. Slack, Martin Rittner, Franco Pirajno, Jonathan O’Neil & Crispin T. S. Little

Although it is not known when or where life on Earth began, some of the earliest habitable environments may have been submarine-hydrothermal vents. Here we describe putative fossilized microorganisms that are at least 3,770 million and possibly 4,280 million years old in ferruginous sedimentary rocks,

01 Mar 19:26

Evolution: How humans adapt to arsenic

Evolution: How humans adapt to arsenic

Nature 543, 7643 (2017). doi:10.1038/543009b

People living in Chile's Atacama Desert have different versions of a gene that allow them to cope with the region's naturally high levels of arsenic.Arsenic from rocks seeps into the desert's scarce water sources, exposing people in the Camarones Valley to levels 100 times

27 Feb 21:30

Design of multi-phase dynamic chemical networks

by Chenrui Chen

Nature Chemistry. doi:10.1038/nchem.2737

Authors: Chenrui Chen, Junjun Tan, Ming-Chien Hsieh, Ting Pan, Jay T. Goodwin, Anil K. Mehta, Martha A. Grover & David G. Lynn

Di- and tripeptide building blocks in which the C-terminus has been converted into an aldehyde are shown to form dynamic chemical networks through imine condensation followed by the formation of cyclic N,N-acetals. The networks exhibit multi-phase growth of prion-like assemblies that template the formation of chain-length-specific peptide-like oligomers.

27 Feb 21:29

Catalytic diversity in self-propagating peptide assemblies

by Tolulope O. Omosun

Nature Chemistry. doi:10.1038/nchem.2738

Authors: Tolulope O. Omosun, Ming-Chien Hsieh, W. Seth Childers, Dibyendu Das, Anil K. Mehta, Neil R. Anthony, Ting Pan, Martha A. Grover, Keith M. Berland & David G. Lynn

Simple peptides are shown to assemble into well-defined amyloid phases with paracrystalline surfaces that can catalyse reactions in an enantioselective manner. Modifying individual amino acids in the building blocks enables the structure of the assembled aggregates, and the reactions that they can catalyse, to be controlled predictably.