06 Apr 19:38
by Yizhou Liu
Assignment of complex molecular structures from nuclear magnetic resonance (NMR) data can be prone to interpretational mistakes. Residual dipolar couplings and residual chemical shift anisotropy provide a spatial view of the relative orientations between bonds and chemical shielding tensors, respectively, regardless of separation. Consequently, these data constitute a reliable reporter of global structural validity. Anisotropic NMR parameters can be used to evaluate investigators’ structure proposals or structures generated by computer-assisted structure elucidation. Application of the method to several complex structure assignment problems shows promising results that signal a potential paradigm shift from conventional NMR data interpretation, which may be of particular utility for compounds not amenable to x-ray crystallography.
Authors: Yizhou Liu, Josep Saurí, Emily Mevers, Mark W. Peczuh, Henk Hiemstra, Jon Clardy, Gary E. Martin, R. Thomas Williamson
28 Mar 20:02
by Martin Setvin, Jan Hulva, Gareth S. Parkinson, Michael Schmid, Ulrike Diebold
Activation of molecular oxygen is a key step in converting fuels into energy, but there is precious little experimental insight into how the process proceeds at the atomic scale. Here, we show that a combined atomic force microscopy/scanning tunneling microscopy (AFM/STM) experiment can both distinguish neutral O2 molecules in the...
28 Mar 16:01
by Sabine Becker, Peter Müller
Abstract
Critically discussing and, if necessary, questioning results presented by other researchers has always been a vitally important process in science. Only through fruitful discourse does science arrive at broadly accepted hypotheses that finally become what we accept as scientific truth. In the spirit of this time-honored tradition, we have examined the crystal structure as well as X-ray diffraction data of the proposed compound [K(crypt-222)]+CF3−, which has recently been published. We arrived at the conclusion that the claim of the authors to have successfully and unambiguously characterized the ionic [K(crypt-222)]+CF3− through single-crystal X-ray diffraction is not sustainable. Even though it is possible that the original authors have indeed encountered the proposed species, the purpose of this report is to point out that the original authors cannot use the presented crystallographic data and model as proof for the existence of [K(crypt-222)]+CF3−. The reason for our conclusion is two-fold: firstly, the crystal structure was not refined to established standards of good crystallographic practice and secondly, even if best practices of structure determination are employed, the submitted diffraction data do not allow establishing conclusively the true nature of the compound at hand. Recognizing that this gives charge unbalance we have not resolved, we nevertheless suggest an alternative molecular model, [K(crypt-222)]⋅CHF3, to demonstrate the ambiguity of the diffraction data submitted by the original authors. However, because of this ambiguity, it is important to point out that the purpose of this report is not (and cannot be) the determination of the true nature of the compound at hand; we would merely like to demonstrate that an alternative interpretation of the original diffraction data is possible and, hence, that the conclusion drawn by the original authors is not unambiguously supported by their own data.
Playing devil's advocate: The recently published crystal structure of [K(crypt-222)]+CF3− is put to the test and its scientific impact is evaluated by a comparison with the alternative refinement model of [K(crypt-222)]⋅CHF3.
27 Mar 16:31
by Zacharias J. Kinney and C. Scott Hartley
Journal of the American Chemical Society
DOI: 10.1021/jacs.7b00149
25 Mar 11:31
by Xian-Sheng Ke, Taeyeon Kim, James T. Brewster, Vincent M. Lynch, Dongho Kim and Jonathan L. Sessler
Journal of the American Chemical Society
DOI: 10.1021/jacs.7b00735
24 Mar 18:40
by Shigehisa Akine, Masato Miyashita and Tatsuya Nabeshima
Journal of the American Chemical Society
DOI: 10.1021/jacs.7b00840
23 Mar 06:06
by Thomas Schwarze, Holger Müller, Darya Schmidt, Janine Riemer, Hans-Jürgen Holdt
Na+ is one of the top analytes in the life sciences. Therefore, the development of easily accessible and highly Na+ selective fluorescent tools to monitor extra- or intracellular Na+ levels by fluorescence enhancement is still a challenge. Here, we report easily synthesizable fluorescent probes for Na+ made by “click” chemistry. These fluorescent probes show tunable fluorescence emission wavelengths, dissociation constants, and different Na+/K+ selectivities in CH3CN and H2O. More information can be found in the Full Paper by H.-J. Holdt et al. (DOI: 10.1002/chem.201605986).
21 Mar 19:56
by Alexander J. Wagner, Dmitry Yu. Zubarev, Alán Aspuru-Guzik and Donna G. Blackmond
ACS Central Science
DOI: 10.1021/acscentsci.7b00085
21 Mar 17:02
by Anna Lavrenova, Diederik W. R. Balkenende, Yoshimitsu Sagara, Stephen Schrettl, Yoan C. Simon and Christoph Weder
Journal of the American Chemical Society
DOI: 10.1021/jacs.7b00342
18 Mar 18:06
by Joost Snijder
Cyanobacteria have a robust circadian oscillator, known as the Kai system. Reconstituted from the purified protein components KaiC, KaiB, and KaiA, it can tick autonomously in the presence of adenosine 5′-triphosphate (ATP). The KaiC hexamers enter a natural 24-hour reaction cycle of autophosphorylation and assembly with KaiB and KaiA in numerous diverse forms. We describe the preparation of stoichiometrically well-defined assemblies of KaiCB and KaiCBA, as monitored by native mass spectrometry, allowing for a structural characterization by single-particle cryo–electron microscopy and mass spectrometry. Our data reveal details of the interactions between the Kai proteins and provide a structural basis to understand periodic assembly of the protein oscillator.
Authors: Joost Snijder, Jan M. Schuller, Anika Wiegard, Philip Lössl, Nicolas Schmelling, Ilka M. Axmann, Jürgen M. Plitzko, Friedrich Förster, Albert J. R. Heck
17 Mar 05:49
by Alissa Idelson, Christopher Sterzenbach, Stefan-S. Jester, Carsten Tschierske, Ute Baumeister and Sigurd Höger
Journal of the American Chemical Society
DOI: 10.1021/jacs.6b13020
14 Mar 20:42
by Alexander Ruf, Basem Kanawati, Norbert Hertkorn, Qing–Zhu Yin, Franco Moritz, Mourad Harir, Marianna Lucio, Bernhard Michalke, Joshua Wimpenny, Svetlana Shilobreeva, Basil Bronsky, Vladimir Saraykin, Zelimir Gabelica, Regis D. Gougeon, Eric Quirico, Stefan Ralew, Tomasz Jakubowski, Henning Haack, Michael Gonsior, Peter Jenniskens, Nancy W. Hinman, Philippe Schmitt–Kopplin
The rich diversity and complexity of organic matter found in meteorites is rapidly expanding our knowledge and understanding of extreme environments from which the early solar system emerged and evolved. Here, we report the discovery of a hitherto unknown chemical class, dihydroxymagnesium carboxylates [(OH)2MgO2CR]−, in meteoritic soluble organic matter. High...
02 Mar 20:28
by Christian S. Diercks
Just over a century ago, Lewis published his seminal work on what became known as the covalent bond, which has since occupied a central role in the theory of making organic molecules. With the advent of covalent organic frameworks (COFs), the chemistry of the covalent bond was extended to two- and three-dimensional frameworks. Here, organic molecules are linked by covalent bonds to yield crystalline, porous COFs from light elements (boron, carbon, nitrogen, oxygen, and silicon) that are characterized by high architectural and chemical robustness. This discovery paved the way for carrying out chemistry on frameworks without losing their porosity or crystallinity, and in turn achieving designed properties in materials. The recent union of the covalent and the mechanical bond in the COF provides the opportunity for making woven structures that incorporate flexibility and dynamics into frameworks.
Authors: Christian S. Diercks, Omar M. Yaghi