19 May 17:55
by Jeong Soo Sung, Ji-Hong Bong, Tae Gyeong Yun, Yeonju Han, Yusun Park, Jaeyong Jung, Soo Jeong Lee, Min-Jung Kang, Joachim Jose, Misu Lee, and Jae-Chul Pyun

Bioconjugate Chemistry
DOI: 10.1021/acs.bioconjchem.2c00107
19 May 15:24
by Dobeen Hwang, Napon Nilchan, HaJeung Park, Raktim N. Roy, William R. Roush, and Christoph Rader

Bioconjugate Chemistry
DOI: 10.1021/acs.bioconjchem.2c00146
11 May 22:24
by Sitao Xie,
Zhimin Wang,
Ting Fu,
Liyan Zheng,
Hui Wu,
Lei He,
Huidong Huang,
Cai Yang,
Ruowen Wang,
Xu Qian,
Liping Qiu,
Weihong Tan
Aptamer sgc8c equipped with an ATP-responsive protection module, termed ARP-sgc8c, was designed. ARP-sgc8c could be selectively protected from nuclease degradation in the tumor microenvironment through specific incorporation along with high-concentration ATP, while its rapid degradation was maintained in healthy tissues.
Abstract
Aptamers are emerging as promising molecular tools in cancer-targeted theranostics. Improving their in vivo stability has been a critical issue in promoting clinical translation, but such efforts could lead to more serious side effects resulting from prolonged retention in healthy organs. To address this problem, we developed an environment-responsive stabilization strategy for the selective enhancement of aptamer biostability in the tumor microenvironment (TME). Briefly, by means of the end extension of an ATP-responsive protection (ARP) module, the designed aptamer could be protected from nuclease degradation through the specific incorporation of ATP. Based on our in vivo results, this ARP-aptamer probe was effectively accumulated in tumors via aptamer-based molecular recognition. It showed selectively prolonged tumor retention time, but rapid digestion in healthy organs. Our strategy should provide a new paradigm for the development of organ-specific nucleic acid-based imaging and therapeutic agents.
11 May 21:34
by Feng Liu, Hong-Ming Chen, Zachary Armstrong, and Stephen G. Withers

ACS Central Science
DOI: 10.1021/acscentsci.1c01172
10 May 15:56
by Tin Tin Manh Nguyen, Van-Hieu Mai, Han Sun Kim, Doyeon Kim, Munjun Seo, Yong Jin An, and Sunghyouk Park

Journal of the American Chemical Society
DOI: 10.1021/jacs.1c10998
10 May 15:55
by Yamaguchi, S.
Methods to label intercellular contact attract particular attention due to their potential in cell biological and medical applications through analysis of intercellular communications. In this study, a simple and versatile method for chemoenzymatically labeling the intercellularly contacting cell was developed by using a cell-surface anchoring reagent of poly(ethylene glycol)(PEG)-lipid conjugate. The surfaces of each cell in cell pairs of interest were efficiently decorated with sortase A (SrtA) and triglycine peptide that were lipidated with PEG-lipid, respectively. In the mixture of the two cell populations, the triglycine-modified cells were enzymatically labeled with a fluorescent labeling reagent by contacting with the SrtA-modified cells both on the substrate and in cell suspensions. Such selective labeling of the contacting cells was confirmed by confocal microscopy and flow cytometry. The results show a proof of principle that the present method is a promising tool for selective visualization and quantification of the intercellularly contacting cells among cell mixtures in cell-cell communication analysis.
09 May 14:40
by Clinton C. Dawson,
Jason E. Cummings,
Julie M. Starkey,
Richard A. Slayden
Our investigation uncovered a novel antisense RNA, asRelE2, that regulates relE2 in the type II relBE2 locus. The transcription of this novel tripartite hybrid type IIb TA locus, relBE2-asrelE2, is regulated by Crpmtb in a cAMP-dependent manner. RelB2 and RelE2 are differentially regulated by targeted degradation of the relE2-asrelE2 dsRNA hybrid by the RNases, Rnc. This novel molecular mechanism ultimately implicates antisense-mediated differential regulation of TA systems in Mtb persistence and pathogenesis.
Abstract
Toxin-antitoxin loci regulate adaptive responses to stresses associated with the host environment and drug exposure. Phylogenomic studies have shown that Mycobacterium tuberculosis encodes a naturally expanded type II toxin-antitoxin system, including ParDE/RelBE superfamily members. Type II toxins are presumably regulated exclusively through protein–protein interactions with type II antitoxins. However, experimental observations in M. tuberculosis indicated that additional control mechanisms regulate RelBE2 type II loci under host-associated stress conditions. Herein, we describe for the first time a novel antisense RNA, termed asRelE2, that co-regulates RelE2 production via targeted processing by the Mtb RNase III, Rnc. We find that convergent expression of this coding-antisense hybrid TA locus, relBE2-asrelE2, is controlled in a cAMP-dependent manner by the essential cAMP receptor protein transcription factor, Crp, in response to the host-associated stresses of low pH and nutrient limitation. Ex vivo survival studies with relE2 and asrelE2 knockout strains showed that RelE2 contributes to Mtb survival in activated macrophages and low pH to nutrient limitation. To our knowledge, this is the first report of a novel tripartite type IIb TA loci and antisense post-transcriptional regulation of a type II TA loci.
09 May 14:25
by Cabalteja, C. C.
Peptide epitope tags offer a valuable means for detection and manipulation of protein targets for which high quality detection reagents are not available. Most commonly used epitope tags are bound by conventional, full-size antibodies (Abs). The complex architecture of Abs complicates their application in protein engineering and intracellular applications. To address these shortcomings, single domain antibodies (nanobodies, Nbs) that recognize short peptide epitopes have become increasingly prized. Here we characterize the interaction between a Nb (Nb6E) and a 14-mer peptide epitope. We identify residues in the peptide epitope essential for high affinity binding. Using this information in combination with computational modeling we propose a mode of interaction between Nb6E and this epitope. We apply this nanobody-epitope pair to augment the potency of a ligand at an engineered adenosine A2A receptor. This characterization of the nanobody-epitope pair opens the door to diverse applications including mechanistic studies of G protein-coupled receptor function.
09 May 14:17
by Mingshu Xiao,
Wei Lai,
Xiaowei Yao,
Hao Pei,
Chunhai Fan,
Li Li
DNA probabilistic circuits were engineered to precisely regulate artificial receptor clustering on the cell membrane, which could allow modulation of the natural killer cell–cancer cell interactions to promote efficient cancer cell killing. This study provides an effective tool for precise control over cellular recognition and cell-based immunotherapy.
Abstract
Developing strategies to enhance the recognition ability of immune cells is important to the success of cell-based cancer immunotherapy. Herein, we report programming receptor clustering on membrane with DNA probabilistic circuits for enhanced immune cell recognition. By designing the circuit output to activate receptors for binding to adjacent receptors, we can engineer DNA probabilistic circuits for programmable regulation of receptor clustering. The generated receptor clusters show higher binding affinity to target cancer cells and improved membrane-anchoring stability compared with monomers. We demonstrate that programming receptor clustering could allow to modulate the recognition capability of natural killer cells and control natural killer cell–cancer cell interactions to promote efficient cancer cell killing. This work provides insights for precise control over cellular recognition and opens new opportunities for the development of cell-based immunotherapy.
02 May 15:59
by Hirotaka Kawanabe-Matsuda
Cancer Discov. 2022 May 2;12(5):1336-1355. doi: 10.1158/2159-8290.CD-21-0929.
ABSTRACT
Microbes and their byproducts have been reported to regulate host health and immune functions. Here we demonstrated that microbial exopolysaccharide produced by Lactobacillus delbrueckii subsp. bulgaricus OLL1073R-1 (EPS-R1) induced CCR6+ CD8+ T cells of mice and humans. In mice, ingestion of EPS-R1 augmented antitumor effects of anti-CTLA-4 or anti-PD-1 monoclonal antibody against CCL20-expressing tumors, in which infiltrating CCR6+ CD8+ T cells were increased and produced IFNγ accompanied by a substantial immune response gene expression signature maintaining T-cell functions. Of note, the antitumor adjuvant effect of EPS-R1 was also observed in germ-free mice. Furthermore, the induction of CCR6 expression was mediated through the phosphorylated structure in EPS-R1 and a lysophosphatidic acid receptor on CD8+ T cells. Overall, we find that dietary EPS-R1 consumption induces CCR6+ CD8+ T cells in Peyer's patches, favoring a tumor microenvironment that augments the therapeutic effect of immune-checkpoint blockade depending on CCL20 production by tumors.
SIGNIFICANCE: Gut microbiota- and probiotic-derived metabolites are attractive agents to augment the efficacy of immunotherapies. Here we demonstrated that dietary consumption of Lactobacillus-derived exopolysaccharide induced CCR6+ CD8+ T cells in Peyer's patches and improved the tumor microenvironment to augment the therapeutic effects of immune-checkpoint blockade against CCL20-producing tumors. See related commentary by Di Luccia and Colonna, p. 1189. This article is highlighted in the In This Issue feature, p. 1171.
PMID:35180303 | PMC:PMC9662940 | DOI:10.1158/2159-8290.CD-21-0929
28 Apr 15:33
by Josef A. Gramespacher, Adam D. Cotton, Paul W. W. Burroughs, Ian B. Seiple, and James A. Wells

ACS Chemical Biology
DOI: 10.1021/acschembio.2c00185