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29 Jun 09:51

Funding: end ‘publish or perish’ for postdocs

by Thomas Lemberger

Nature, Published online: 07 June 2022; doi:10.1038/d41586-022-01541-1

Funding: end ‘publish or perish’ for postdocs
27 Jun 08:59

Boronic acid chemistry for fluorescence-based quantitative DNA sensing

Chem. Commun., 2022, 58,7936-7939
DOI: 10.1039/D2CC02584A, Communication
Pranay Amruth Maroju, Ramakrishnan Ganesan, Jayati Ray Dutta
The current study demonstrates quantitative detection of DNA through boronic acid-mediated bridging between the double helices via the hydroxy groups at the 3′ termini, which opens up new avenues in the realm of oligonucleotide biochemistry.
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27 Jun 06:32

Novel acylhydrazone based chemosensor: “On-off” fluorescent and chromogenic detection of F− and Fe3+ with high selectivity and sensitivity

Publication date: 13 August 2022

Source: Tetrahedron, Volume 120

Author(s): Aina Bai, Yongxin Zhang, Jiajie Tian, Yaodong Huang, Junjiao Yang

26 Jun 10:30

Parallel Screening with 14C‐Labeled Carbon Dioxide: De‐risking the Staudinger‐Aza‐Wittig Reaction

by Victor Babin, Antoine Sallustrau, Maxime Molins, Alexandre Labiche, Amélie Goudet, Frédéric Taran, Davide Audisio
Parallel Screening with 14C-Labeled Carbon Dioxide: De-risking the Staudinger-Aza-Wittig Reaction**

A de-risking approach was developed to evaluate the robustness of the Staudinger aza-Wittig sequence. This technology is based on [14C]CO2 screening that allowed to investigate the tolerance of the procedure with most representative heterocycles and functional groups found in FDA drugs.


Abstract

Carbon isotope labeling is a useful technology for tracking the fate of organic compounds in the environment and in living organisms. In this context, the development of robust and general methodologies amenable to the direct functionalization of CO2 remains a significant task. In this communication, a de-risking approach was developed to evaluate the robustness of the Staudinger aza-Wittig sequence for carbon isotope labeling. This technology is based on [14C]CO2 screening that allowed to investigate the tolerance of the procedure with most representative heterocycles and functional groups found in FDA approved drugs.

26 Jun 10:29

Enantioselective Dual Catalysis of N‐Heterocyclic Carbene and Hydrogen‐Bond Donor Organocatalysts

by Hongling Wang, Yonggui Robin Chi, Xuan Huang
Enantioselective Dual Catalysis of N-Heterocyclic Carbene and Hydrogen-Bond Donor Organocatalysts

The combination of N-heterocyclic carbene and hydrogen-bond donor enables new modes of reactivity not previously available by using either catalyst alone. Clever selection of hydrogen-bond donor can lead to increased yields, enhanced reactivity, and improved stereoselectivity. This minireview summarized the advances of bifunctional NHC and some of the development of NHC and hydrogen-bond donor for dual catalytic enantioselective reactions.


Abstract

N-heterocyclic carbene (NHC) catalysis has become a versatile catalysis strategy for building molecules via unique reaction modes. Dual catalytic processes using NHCs in combination with additional modulating agents such as another organocatalyst or transition-metal catalyst have also been studied. The clear selection of cocatalysts has led to enhanced reactivity, increased yields, and/or improved stereoselectivity. This minireview is to provide readers with a brief overview of the development and applications of NHC and hydrogen-bond donor for dual catalytic reactions.

26 Jun 10:25

(2-Aminoaryl)iminophosphoranes as Versatile Starting Materials for the Synthesis of 1-Aryl-2-trifluoromethylbenzimidazoles

by Walewska-Królikiewicz, Magdalena

Synlett
DOI: 10.1055/s-0041-1737489



A new route to 2-(trifluoromethyl)benzimidazoles is described which involves the condensation of (2-arylamino)iminophosphoranes with trifluoroacetyl esters or trifluoroacetic anhydride. The method allows the synthesis of the title compounds from simple nitroarenes without the use of separate reduction steps and metallic reagents or expensive catalysts.
[...]

Georg Thieme Verlag KG Rüdigerstraße 14, 70469 Stuttgart, Germany

Article in Thieme eJournals:
Table of contents  |  Abstract  |  Full text

26 Jun 10:24

Synthesis of Nitrogen Heterocycles by Domino C–N Coupling/Hydroamination Reactions

by Langer, Peter

Synlett
DOI: 10.1055/s-0041-1738384



The present article presents a personalized Account on the synthesis of nitrogen heterocycles by domino C–N coupling/hydroamination reactions and related processes. The starting materials, 2-alkynyl-1-halohetarenes, are regioselectively available by Sonogashira reactions of various 1,2-dihalogenated heterocycles, such as thiophenes, benzothiophenes, furans and benzofurans, pyridines, quinolines, pyrimidines, and other ring systems. More complex products are formed by domino C–N coupling/hydroamination/C–H arylation reactions of 2-alkynyl-1-halohetarenes with 2-bromoanilines. In these reactions, not only two, but three bonds are formed in one step. In many cases, the products constitute new heterocyclic core structures and show interesting pharmacological or fluorescence properties.1 Introduction2 Domino C–N Coupling/Hydroamination Reactions3 Domino C–N Coupling/Hydroamination/C–H Arylation Reactions4 Conclusions
[...]

Georg Thieme Verlag KG Rüdigerstraße 14, 70469 Stuttgart, Germany

Article in Thieme eJournals:
Table of contents  |  Abstract  |  Full text

25 Jun 16:21

New Approaches toward Building Csp−P bond: A Two‐Decade Overview

by Lucas Mele, Jean-Luc Pirat, Tahar Ayad, David Virieux
New Approaches toward Building Csp−P bond: A Two-Decade Overview

Preparation of 1-alkynylphosphorus compounds has seen significant developments. Transition metals proved to be particularly suitable catalysts allowing the transfer of alkynyl units to various phosphorus reagents forming phosphines, phosphine boranes, phosphine oxides and phosphonates. This review also reports metal-free approaches that use acidic or basic activation, hypervalent iodine reagents and desulfonative reactions.


Abstract

Since the review of Savignac, the past 20 years have seen significant progresses on the synthesis of alkynylphosphorus compounds considerably expanding the original and rather limited organic toolbox. This comprehensive review explores the latest and potentially greener methodologies using sustainable catalysis or direct metal-free couplings from stable and easy to handle precursors. Recent progress and mechanistic insights for metal-catalyzed reactions with a particular emphasis on copper, palladium, nickel and silver catalytic systems, photocatalytic and metal-free reactions are detailed covering most of the publications related to this field since 2000 until March 2022.

25 Jun 13:46

Synergistic Strategies in Aminocatalysis

by Antonio Del Vecchio, Arianna Sinibaldi, Valeria Nori, Giuliana Giorgianni, Graziano Di Carmine, Fabio Pesciaioli
Synergistic Strategies in Aminocatalysis

Come together: Asymmetric aminocatalysis plays a pivotal role on the development in stereoselective transformations, synergistically combined with organo-, metal, photoredox and electrocatalysis. In this scenario, the HOMO-raising and LUMO-lowering activation of carbonyl compounds open new gateways to complex architectures and new sustainable reactivities. Last but not least, this research area will keep driving the development of the whole organocatalysis, toward its synergistic combination with other activation strategies.


Abstract

Synergistic catalysis offers the unique possibility of simultaneous activation of both the nucleophile and the electrophile in a reaction. A requirement for this strategy is the stability of the active species towards the reaction conditions and the two concerted catalytic cycles. Since the beginning of the century, aminocatalysis has been established as a platform for the stereoselective activation of carbonyl compounds through HOMO-raising or LUMO-lowering. The burgeoning era of aminocatalysis has been driven by a deep understanding of these activation and stereoinduction modes, thanks to the introduction of versatile and privileged chiral amines. The aim of this review is to cover recent developments in synergistic strategies involving aminocatalysis in combination with organo-, metal-, photo-, and electro-catalysis, focusing on the evolution of privileged aminocatalysts architectures.

25 Jun 11:31

Late‐Stage Functionalisation of Peptides on the Solid Phase by an Iodination‐Substitution Approach

by Marius Werner, Julius Pampel, Truc Lam Pham, Franziska Thomas
Late-Stage Functionalisation of Peptides on the Solid Phase by an Iodination-Substitution Approach

An on-resin iodination-substitution approach is established to easily introduce various functional modifications into peptides at a late synthesis stage. The method allows access to methionine-like thioethers, selenoethers, thioglycosides, pyridinium salts, and fluorescent labels in a combinatorial manner. Using this approach, we synthesised an iFRET-based ZnII sensor by labelling a designed β-sheet minireceptor prototype with 7-mercapto-4-methylcoumarin.


Abstract

The functionalisation of peptides at a late synthesis stage holds great potential, for example, for the synthesis of peptide pharmaceuticals, fluorescent biosensors or peptidomimetics. Here we describe an on-resin iodination-substitution reaction sequence on homoserine that is also suitable for peptide modification in a combinatorial format. The reaction sequence is accessible to a wide range of sulfur nucleophiles with various functional groups including boronic acids, hydroxy groups or aromatic amines. In this way, methionine-like thioethers or thioesters and thiosulfonates are accessible. Next to sulfur nucleophiles, selenols, pyridines and carboxylic acids were successfully used as nucleophiles, whereas phenols did not react. The late-stage iodination-substitution approach is not only applicable to short peptides but also to the more complex 34-amino-acid WW domains. We applied this strategy to introduce 7-mercapto-4-methylcoumarin into a switchable ZnII responsive WW domain to design an iFRET-based ZnII sensor.

24 Jun 16:08

Aminocatalysts are More Environmentally Friendly than Hydrogen‐Bonding Catalysts

by Mariliis Sihtmäe, Estelle Silm, Kadri Kriis, Anne Kahru, Tõnis Kanger
Aminocatalysts are More Environmentally Friendly than Hydrogen-Bonding Catalysts

Ecotoxicity: Organocatalysis is a widely used method of green and sustainable chemistry. The toxicity of a library of selected organocatalysts is determined, and it is found that aminocatalysts are of low ecotoxicity, but thioureas and squaramides prove about 10-fold more toxic. Thus, the latter compounds may be harmful to the environment and need more thorough (eco)toxicological evaluation.


Abstract

The importance of asymmetric organocatalysis in contemporary organic synthesis is widely acknowledged. However, there are practically no data on the environmental safety of organocatalysts, although this aspect is crucial for the sustainability of all new materials, chemicals, and technologies. To start to fill this data-gap, a library of 26 organocatalysts containing hydrogen-bonding catalysts [(thio)ureas and squaramides] and aminocatalysts (primary or secondary amines) was evaluated for their toxicity using the naturally luminescent Vibrio fischeri bacteria (ISO assay; one of the most widely used ecotoxicity tests). Thioureas and squaramides were shown to be relatively toxic: none of them was ranked as “not harmful” (i. e., half maximal effective concentration EC50>100 mg L−1), whereas the presence of the trifluoromethyl moiety increased their toxic effect. Importantly, the aminocatalysts, whose EC50 values ranged from 25 to >300 mg L−1, could be considered remarkably more environmentally safe or green alternatives.

24 Jun 16:03

Methyltransferases: Functions and Applications

by Eman Abdelraheem, Benjamin Thair, Romina Fernández Varela, Emely Jockmann, Désirée Popadić, Helen C. Hailes, John M. Ward, Adolfo M. Iribarren, Elizabeth S. Lewkowicz, Jennifer N. Andexer, Peter-Leon Hagedoorn, Ulf Hanefeld
Methyltransferases: Functions and Applications

Methyltransferases are enzymes that will in the future enable clean and green alkylation of amino and hydroxy groups as well as reactive carbon atoms. These enzymes, their cofactor SAM (S-adenosylmethionine) and the opportunities’ they offer for new SN2 chemistries are highlighted.


Abstract

In this review the current state-of-the-art of S-adenosylmethionine (SAM)-dependent methyltransferases and SAM are evaluated. Their structural classification and diversity is introduced and key mechanistic aspects presented which are then detailed further. Then, catalytic SAM as a target for drugs, and approaches to utilise SAM as a cofactor in synthesis are introduced with different supply and regeneration approaches evaluated. The use of SAM analogues are also described. Finally O-, N-, C- and S-MTs, their synthetic applications and potential for compound diversification is given.

24 Jun 14:49

Proteolysis-targeting chimera (PROTAC) delivery system: advancing protein degraders towards clinical translation

Chem. Soc. Rev., 2022, 51,5330-5350
DOI: 10.1039/D1CS00762A, Tutorial Review
Yu Chen, Ira Tandon, William Heelan, Yixin Wang, Weiping Tang, Quanyin Hu
This tutorial review discusses the convergence of drug delivery systems and PROTACs, surveys the burgeoning PROTAC delivery strategies, summarizes their design principles, clarifies their challenges, and outlooks future translational opportunities.
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24 Jun 14:48

My pandemic postdoc

by Shira Joudan

Nature Chemistry, Published online: 06 June 2022; doi:10.1038/s41557-022-00960-x

In early 2020, Shira Joudan was in the final stages of her PhD when the COVID-19 pandemic hit. Despite the challenging circumstances, she graduated, found a postdoc position and will begin her independent academic career in early 2023.
24 Jun 08:45

Progress in the catalytic reactions of CO2 and epoxides to selectively provide cyclic or polymeric carbonates

Green Chem., 2022, 24,5007-5034
DOI: 10.1039/D2GC01422J, Critical Review
Gulzar A. Bhat, Donald J. Darensbourg
This review of the metal- and organo-catalyzed coupling of CO2 and epoxides (oxiranes) to provide selectively cyclic or polymeric carbonates is intended to highlight recent achievements in this area of research.
The content of this RSS Feed (c) The Royal Society of Chemistry
24 Jun 08:39

PPh3‐Mediated Wittig‐Like/Mannich Tandem Reactions of 2‐Alkynylnitrobenzenes with Ketones for the Synthesis of 2,2‐Disubstituted Indolin‐3‐Ones

by Hui Fan, Yao Xu, Fan Yang, Shijie Xu, Xuechun Zhao, Xiaoxiang Zhang
PPh3-Mediated Wittig-Like/Mannich Tandem Reactions of 2-Alkynylnitrobenzenes with Ketones for the Synthesis of 2,2-Disubstituted Indolin-3-Ones


Abstract

A synthetic strategy for the construction of 2,2-disubstituted indolin-3-ones from 2-alkynylnitroarenes and ketones has been described. The corresponding indolin-3-one derivatives were afforded in moderate to excellent product yields by using mild conditions. After a Wittig-like process, the key intermediates 3H-indol-3-ones were generated from 2-alkynylnitroarenes, which could be further transformed to the desired products through a Mannich addition.

21 Jun 14:32

Ligand‐Enabled Disproportionation of 1,2‐Diphenylhydrazine at a PV‐Center

by Manuel Alcarazo, Simon B. H. Karnbrock, Christopher Golz, Ricardo A. Mata
Ligand-Enabled Disproportionation of 1,2-Diphenylhydrazine at a PV-Center**

An unprecedented P-based catalyst able to promote hydrazine disproportionation has been synthesized. The available set of experimental results and theoretical calculations suggest that this reactivity is unlocked by the cooperation between a redox-active bis(amidophenolate) ligand and the highly electrophilic central P-atom.


Abstract

We present herein the synthesis of a nearly square-pyramidal chlorophosphorane supported by the tetradentate bis(amidophenolate) ligand, N,N′-bis(3,5-di-tert-butyl-2-phenoxy)-1,2-phenylenediamide. After chloride abstraction the resulting phosphonium cation efficiently promotes the disproportionation of 1,2-diphenylhydrazine to aniline and azobenzene. Mechanistic studies, spectroscopic analyses and theoretical calculations suggest that this unprecedented reactivity mode for PV-centres is induced by the high electrophilicity at the cationic PV-center, which originates from the geometry constraints imposed by the rigid pincer ligand, combined with the ability of the o-amidophenolate moieties to act as electron reservoir. This study illustrates the promising role of cooperativity between redox-active ligands and phosphorus for the design of organocatalysts able to promote redox processes.

21 Jun 14:27

[ASAP] Accessing Diverse Pyridine-Based Macrocyclic Peptides by a Two-Site Recognition Pathway

by Dinh T. Nguyen, Tung T. Le, Andrew J. Rice, Graham A. Hudson, Wilfred A. van der Donk, and Douglas A. Mitchell

TOC Graphic

Journal of the American Chemical Society
DOI: 10.1021/jacs.2c02824
17 Jun 14:08

Stereoselective peptide catalysis in complex environments – from river water to cell lysates

Chem. Sci., 2022, 13,8963-8967
DOI: 10.1039/D2SC02044K, Edge Article
Open Access Open Access
Tobias Schnitzer, Jonas W. Rackl, Helma Wennemers
The reactivity, stereo-, and chemoselectivity of a tripeptide are so high that it catalyzes conjugate addition reactions with high stereoselectivity in complex compound mixtures—even in cell lysates.
The content of this RSS Feed (c) The Royal Society of Chemistry
17 Jun 11:31

Bioorthogonal click and release: A general, rapid, chemically revertible bioconjugation strategy employing enamine N-oxides

Publication date: 11 August 2022

Source: Chem, Volume 8, Issue 8

Author(s): Dahye Kang, Sanghyeon Lee, Justin Kim

17 Jun 11:30

PROTACs: past, present and future

Chem. Soc. Rev., 2022, 51,5214-5236
DOI: 10.1039/D2CS00193D, Review Article
Ke Li, Craig M. Crews
This review highlights important milestones in the evolution of PROTACs, briefly discusses recent lessons about targeted protein degradation, and conjectures on the efforts still needed to expand the toolbox for PROTAC discovery.
The content of this RSS Feed (c) The Royal Society of Chemistry
17 Jun 08:46

[ASAP] Development of an Ene Reductase-Based Biocatalytic Process for the Production of Flavor Compounds

by Athena Papadopoulou, Christin Peters, Sonja Borchert, Kerstin Steiner, and Rebecca Buller

TOC Graphic

Organic Process Research & Development
DOI: 10.1021/acs.oprd.2c00096
17 Jun 08:43

[ASAP] Mechanistic Studies of a Skatole-Forming Glycyl Radical Enzyme Suggest Reaction Initiation via Hydrogen Atom Transfer

by Beverly Fu, Azadeh Nazemi, Benjamin J. Levin, Zhongyue Yang, Heather J. Kulik, and Emily P. Balskus

TOC Graphic

Journal of the American Chemical Society
DOI: 10.1021/jacs.1c13580
15 Jun 09:53

[ASAP] Palladium-Catalyzed Unimolecular Fragment Coupling of N‑Allylamides via Elimination of Isocyanate

by Ryoma Shimazumi, Riku Tanimoto, Takuya Kodama, and Mamoru Tobisu

TOC Graphic

Journal of the American Chemical Society
DOI: 10.1021/jacs.2c04527
10 Jun 10:00

[ASAP] Specific Activation of Photosensitizer with Extrinsic Enzyme for Precisive Photodynamic Therapy

by Junlong Xiong, Jacky C. H. Chu, Wing-Ping Fong, Clarence T. T. Wong, and Dennis K. P. Ng

TOC Graphic

Journal of the American Chemical Society
DOI: 10.1021/jacs.2c04017
08 Jun 14:59

[ASAP] Platform for Orthogonal N‑Cysteine-Specific Protein Modification Enabled by Cyclopropenone Reagents

by Alena Istrate, Michael B. Geeson, Claudio D. Navo, Barbara B. Sousa, Marta C. Marques, Ross J. Taylor, Toby Journeaux, Sebastian R. Oehler, Michael R. Mortensen, Michael J. Deery, Andrew D. Bond, Francisco Corzana, Gonzalo Jiménez-Osés, and Gonçalo J. L. Bernardes

TOC Graphic

Journal of the American Chemical Society
DOI: 10.1021/jacs.2c02185
08 Jun 14:30

[ASAP] Retraction of “Iridium-Catalyzed Asymmetric Borylation of Unactivated Methylene C(sp3)–H Bonds”

by Ronald L. Reyes, Tomohiro Iwai, Satoshi Maeda, and Masaya Sawamura
Journal of the American Chemical Society
DOI: 10.1021/jacs.2c05463
08 Jun 09:45

[ASAP] Open Source, 3D-Printed TrapGuard to Protect Oil-Sealed Vacuum Pumps from Cold Trap Warming

by Michael B. Spano, Arjun S. Pamidi, and Gregory A. Weiss
LongLarf

cute

TOC Graphic

The Journal of Organic Chemistry
DOI: 10.1021/acs.joc.2c00347
08 Jun 09:29

[ASAP] Highly Chemoselective Ni-Catalyzed Protecting-Group-Free 2,2′-Biphenol Synthesis and Mechanistic Insights

by Cheng-Yu Long, Hao Chen, Cheng Ma, Bo-Wei Zhao, Shen-Huan Li, Yue Cui, Xinge Yang, Shao-Fei Ni, and Xue-Qiang Wang

TOC Graphic

Organic Letters
DOI: 10.1021/acs.orglett.2c01367
05 Jun 13:48

Bis(imidazolium)‐1,3‐diphosphete‐diide: A Building Block for FeC2P2 Complexes and Clusters

by M. T. Scharnhölz, P. Coburger, L. Gravogl, D. Klose, J. J. Gamboa-Carballo, G. Le Corre, J. Bösken, C. Schweinzer, D. Thöny, K. Meyer, Z. Li, Hansjörg Grützmacher
LongLarf

MTS

Bis(imidazolium)-1,3-diphosphete-diide: A Building Block for FeC2P2 Complexes and Clusters

Bis-imidazolium-diphosphete-diide, (IPr)2C2P2, acts as an electronically remarkably flexible ligand to iron carbonyl fragments, giving access to complexes of the general formula [Fe(CO) x {(IPr)2C2P2}] n+ (x=2, 3; n=0, +1, +2). Redox events involve either the metal ion or C2P2 ligand, as demonstrated by EPR, Mössbauer and computational analyses and characterize (IPr)2C2P2 as a redox active ligand.


Abstract

Reaction of the 6π-electron aromatic four-membered heterocycle (IPr)2C2P2 (1) (IPr=1,3-bis(2,6-diisopropylphenyl)-1,3-dihydro-2H-imidazol-2-ylidene) with [Fe2CO9] gives the neutral iron tricarbonyl complex [Fe(CO)33-{(IPr)2C2P2}] (2). Oxidation with two equivalents of the ferrocenium salt, [Fe(Cp)2](BArF24), affords the dicationic tricarbonyl complex [Fe(CO)34-{(IPr)2C2P2}](BArF24)2 (4). The one-electron oxidation proceeds under concomitant loss of one CO ligand to give the paramagnetic dicarbonyl radical cation complex [Fe(CO)24-{(IPr)2C2P2}](BArF24) (5). Reduction of 5 allows the preparation of the neutral dicarbonyl complex [Fe(CO)24-{(IPr)2C2P2}] (6). An analysis by various spectroscopic techniques (57Fe Mössbauer, EPR) combined with DFT calculations gives insight into differences of the electronic structure within the members of this unique series of iron carbonyl complexes, which can be either described as electron precise or Wade–Mingos clusters.