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18 Jun 14:23

Time-resolved cryo-electron microscopy: Recent progress

Yichi_Wang

Key Intermediates in ribosome recycling visualized by time-resolved cryoelectron microscopy
Structure, 24 (2016), pp. 2092–2101

Publication date: December 2017
Source:Journal of Structural Biology, Volume 200, Issue 3
Author(s): Joachim Frank
Time-resolved cryo-electron microscopy (cryo-EM) combines the known advantages of single-particle cryo-EM in visualizing molecular structure with the ability to dissect the time progress of a reaction between molecules in vitro. Here some of the recent progress of this methodology and its first biological applications are outlined.

08 Jun 09:51

Perceptually accurate display of two greyscale images as a single colour image

by A.B. TAYLOR, M.S. IOANNOU, T. WATANABE, K. HAHN, T.-L. CHEW

Summary

Life scientists often desire to display the signal from two different molecular probes as a single colour image, so as to convey information about the probes’ relative concentrations as well as their spatial corelationship. Traditionally, such colour images are created through a merge display, where each greyscale signal is assigned to different channels of an RGB colour image. However, human perception of colour and greyscale intensity is not equivalent. Thus, a merged image display conveys to the typical viewer only a subset of the absolute and relative intensity information present in and between two greyscale images. The Commission Internationale de l'Eclairage L*a*b* colour space (CIELAB) has been designed to specify colours according to the perceptually defined quantities of hue (perceived colour) and luminosity (perceived brightness). Here, we use the CIELAB colour space to encode two dimensions of information about two greyscale images within these two perceptual dimensions of a single colour image. We term our method a Perceptually Uniform Projection display and show using biological image examples how these displays convey more information about two greyscale signals than comparable RGB colour space-based techniques.

Lay description

It is often useful to display the fluorescent signal from two different molecular probes as a single colour image so that information about the probes’ relative concentrations as well as their spatial corelationship can be visualized. A common way to accomplish this effect is to assign each greyscale signal to a different channel of an RGB colour image. However, this method fails to convey much of the information about the two greyscale images, because humans’ perception of colour and monochrome values is not equivalent. We have used the Commission Internationale de l'Eclairage L*a*b* colour space (CIELAB) to display two greyscale images as a single colour image. Our method encodes two dimensions information about the greyscale images as two, perceptually independent and uniform quantities – hue and luminosity – in the colour image. Our technique, which we termed a perceptually uniform projection display, conveys more information about two greyscale signals than comparable RGB colour space-based techniques. We apply this method to display several types of information commonly encountered in cell biology images.

26 May 21:08

TomoMiner and TomoMinerCloud: A Software Platform for Large-Scale Subtomogram Structural Analysis

by Zachary Frazier, Min Xu, Frank Alber
Cryo-electron tomograms often contain a heterogeneous sample of complexes. Classification of large numbers of subtomograms is often a limiting bottleneck. This paper introduces a scalable parallel software platform, TomoMiner, for efficient large-scale subtomogram classification. It also contains a pre-configured cloud computing service to allow instant access.
26 May 20:48

Improved metrics for comparing structures of macromolecular assemblies determined by 3D electron-microscopy

Publication date: July 2017
Source:Journal of Structural Biology, Volume 199, Issue 1
Author(s): Agnel Praveen Joseph, Ingvar Lagerstedt, Ardan Patwardhan, Maya Topf, Martyn Winn
Recent developments in 3-dimensional electron microcopy (3D-EM) techniques and a concomitant drive to look at complex molecular structures, have led to a rapid increase in the amount of volume data available for biomolecules. This creates a demand for better methods to analyse the data, including improved scores for comparison, classification and integration of data at different resolutions. To this end, we developed and evaluated a set of scoring functions that compare 3D-EM volumes. To test our scores we used a benchmark set of volume alignments derived from the Electron Microscopy Data Bank. We find that the performance of different scores vary with the map-type, resolution and the extent of overlap between volumes. Importantly, adding the overlap information to the local scoring functions can significantly improve their precision and accuracy in a range of resolutions. A combined score involving the local mutual information and overlap (LMI_OV) performs best overall, irrespective of the map category, resolution or the extent of overlap, and we recommend this score for general use. The local mutual information score itself is found to be more discriminatory than cross-correlation coefficient for intermediate-to-low resolution maps or when the map size and density distribution differ significantly. For comparing map surfaces, we implemented two filters to detect the surface points, including one based on the ‘extent of surface exposure’. We show that scores that compare surfaces are useful at low resolutions and for maps with evident surface features. All the scores discussed are implemented in TEMPy (http://tempy.ismb.lon.ac.uk/).

17 May 12:19

Structural Evolution of Sub-10 nm Octahedral Platinum–Nickel Bimetallic Nanocrystals

by Qiaowan Chang, Yuan Xu, Zhiyuan Duan, Fei Xiao, Fang Fu, Youngmin Hong, Jeonghyeon Kim, Sang-Il Choi, Dong Su and Minhua Shao

TOC Graphic

Nano Letters
DOI: 10.1021/acs.nanolett.7b01510
03 May 21:34

Thermal Stability of Metal Nanocrystals: An Investigation of the Surface and Bulk Reconstructions of Pd Concave Icosahedra

by Kyle D. Gilroy, Ahmed O. Elnabawy, Tung-Han Yang, Luke T. Roling, Jane Howe, Manos Mavrikakis and Younan Xia

TOC Graphic

Nano Letters
DOI: 10.1021/acs.nanolett.7b00844
02 May 23:03

A Ligand-Exchange Route to Nobel Metal Nanocrystals with a Clean Surface for Enhanced Optical and Catalytic Properties

by Qikui Fan, Kai Liu, Zhaojun Liu, Hongpo Liu, Lei Zhang, Ping Zhong, Chuanbo Gao

Noble metal nanocrystals that are free of capping ligands promise significantly enhanced activities in surface-enhanced Raman scattering (SERS) and catalytic applications. Conventional physical and chemical processes to remove the capping ligands are usually too harsh to retain the morphology and surface structure of the noble metal nanocrystals. In this work, a mild, effective, and robust strategy is presented to remove the capping ligands from the surface of noble metal nanocrystals. Polyvinylpyrrolidone and oleylamine, which are generally known to adsorb strongly on the metal surface, have been successfully removed from the Au and Pt nanocrystals, respectively, by a convenient ligand-exchange process with diethylamine. The resulting surface-clean Au nanospheres and nanoflowers show significantly enhanced activity in SERS with great potential in single-particle SERS applications. The surface-clean Pt nanocrystals show highly improved electrocatalytic activity, compared with those cleaned by conventional methods. It is believed that this novel ligand-exchange strategy opens up new opportunities in eliminating the effect of the capping ligands for optimal activities of colloidal noble metal nanocrystals in a variety of applications.

Thumbnail image of graphical abstract

A delicate ligand-exchange strategy has been developed to remove capping ligands (polyvinylpyrrolidone and oleylamine for example) effectively from colloidal noble metal nanocrystals. It leads to clean metal surface and thus its high accessibility by analytes or reactants, which enables significantly enhanced activity of the metal nanocrystals in surface-enhanced Raman scattering and catalytic applications.

02 May 22:50

Electron crystallography for determining the handedness of a chiral zeolite nanocrystal

by Yanhang Ma

Nature Materials. doi:10.1038/nmat4890

Authors: Yanhang Ma, Peter Oleynikov & Osamu Terasaki

10 Apr 20:26

Fast ‘Operando’ electron nanotomography

by L. ROIBAN, S. LI, M. AOUINE, A. TUEL, D. FARRUSSENG, T. EPICIER

Summary

Electron tomography in transmission electron microscopy provides valuable three-dimensional structural, morphological and chemical information of condensed matter at nanoscale. Current image acquisitions require at least tens of minutes, which prohibits the analysis of nano-objects evolving rapidly such as under dynamic environmental conditions. Reducing the acquisition duration to tens of seconds or less permits to follow in 3D the same object during its evolution under varying temperatures and pressures. We report Operando Electron nanotomography using image series acquired in less than 230 seconds instead of typically 15 min in the best cases so far. The in situ calcination of silica zeolites encaging silver nanoparticles, a catalytic nanosystem of potential interest for, e.g., nuclear waste treatments or selective heterogeneous catalysis, was successfully studied. Kinetic environmental Operando 3D electron microscopy becomes possible, as well as real time observation of beam sensitive samples (polymers, biological objects) without prior preparation, which reduces their contrast and reactivity.

Lay description

The development of nanotechnologies leads to a constant need of better characterisation of shapes and morphologies of nano-objects, nanomaterials, nanoparticles at the appropriate scale that is a submicrometre or nanometre level. These sizes impose transmission electron microscopy technique, an unsurpassed technique to study condensed matter at such a spatial resolution. Because these systems are aimed to be used in ‘real life’, it is further of the greatest importance to perform this analysis in their natural environment, or as close as possible to the conditions under which they are intended to be used. As a typically relevant example here, catalytic systems are developed for making chemical reactions possible, or improving their efficiency, by really manipulating gas molecules, most generally at high temperatures and of course a given gas pressure. Ideally, these investigations should be conducted in 3D: flawed interpretation or measurements are current in 2D images where a tridmensional object is simply projected in a viewing direction, which does not give access to the position of elementary features along, precisely, this viewing direction (this may be up to the point where the projection evokes a totally different object from the real one and this has been used for entertainment for many years – see the nice example of hand shadows by Henry Bursill in the 19th century www.gutenberg.org/files/12962/12962-h/12962-h.htm). 3D analyses can be performed in different ways, a current approach with microscopy techniques is the so-called ‘tilted tomography’, where 2D projections of the object are recorded under several orientations over a large angular amplitude, which allows the volume to be numerically rebuilt with the help of dedicated reconstruction softwares.

Summarising this introduction leads to the goal of the present work: can we perform in situ 3D analyses of nanocatalysts under environmental conditions (temperature and gas pressure) in the transmission electron microscope (TEM)? A positive demonstration will be made using a specific nanocomposite catalyst, which will be literally burnt under oxygen inside an Environmental TEM. The ambitious goal of following in situ the morphological evolution of a nanometric object during an ongoing chemical reaction (or any other dynamic process) raises the question of the speed of image acquisition (during the sample rotation required in ‘tilted tomography’). The duration of the whole acquisition must obviously be faster that the morphological changes of the sample in order to allow correct 3D reconstructions, and this is also what we focus on in the present contribution.

07 Apr 16:37

Compressed sensing for STEM tomography

Publication date: August 2017
Source:Ultramicroscopy, Volume 179
Author(s): Laurène Donati, Masih Nilchian, Sylvain Trépout, Cédric Messaoudi, Sergio Marco, Michael Unser
A central challenge in scanning transmission electron microscopy (STEM) is to reduce the electron radiation dosage required for accurate imaging of 3D biological nano-structures. Methods that permit tomographic reconstruction from a reduced number of STEM acquisitions without introducing significant degradation in the final volume are thus of particular importance. In random-beam STEM (RB-STEM), the projection measurements are acquired by randomly scanning a subset of pixels at every tilt view. In this work, we present a tailored RB-STEM acquisition-reconstruction framework that fully exploits the compressed sensing principles. We first demonstrate that RB-STEM acquisition fulfills the “incoherence” condition when the image is expressed in terms of wavelets. We then propose a regularized tomographic reconstruction framework to recover volumes from RB-STEM measurements. We demonstrate through simulations on synthetic and real projection measurements that the proposed framework reconstructs high-quality volumes from strongly downsampled RB-STEM data and outperforms existing techniques at doing so. This application of compressed sensing principles to STEM paves the way for a practical implementation of RB-STEM and opens new perspectives for high-quality reconstructions in STEM tomography.

06 Apr 21:16

Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods

Publication date: May 2017
Source:Journal of Structural Biology, Volume 198, Issue 2
Author(s): Xiaohua Wan, Tsvi Katchalski, Christopher Churas, Sreya Ghosh, Sebastien Phan, Albert Lawrence, Yu Hao, Ziying Zhou, Ruijuan Chen, Yu Chen, Fa Zhang, Mark H. Ellisman
Because of the significance of electron microscope tomography in the investigation of biological structure at nanometer scales, ongoing improvement efforts have been continuous over recent years. This is particularly true in the case of software developments. Nevertheless, verification of improvements delivered by new algorithms and software remains difficult. Current analysis tools do not provide adaptable and consistent methods for quality assessment. This is particularly true with images of biological samples, due to image complexity, variability, low contrast and noise. We report an electron tomography (ET) simulator with accurate ray optics modeling of image formation that includes curvilinear trajectories through the sample, warping of the sample and noise. As a demonstration of the utility of our approach, we have concentrated on providing verification of the class of reconstruction methods applicable to wide field images of stained plastic-embedded samples. Accordingly, we have also constructed digital phantoms derived from serial block face scanning electron microscope images. These phantoms are also easily modified to include alignment features to test alignment algorithms. The combination of more realistic phantoms with more faithful simulations facilitates objective comparison of acquisition parameters, alignment and reconstruction algorithms and their range of applicability. With proper phantoms, this approach can also be modified to include more complex optical models, including distance-dependent blurring and phase contrast functions, such as may occur in cryotomography.

02 Apr 13:55

Atomic-Scale Snapshots of the Formation and Growth of Hollow PtNi/C Nanocatalysts

by Raphaël Chattot, Tristan Asset, Jakub Drnec, Pierre Bordet, Jaysen Nelayah, Laetitia Dubau and Frédéric Maillard

TOC Graphic

Nano Letters
DOI: 10.1021/acs.nanolett.7b00119
15 Mar 20:01

High-Indexed Pt3Ni Alloy Tetrahexahedral Nanoframes Evolved through Preferential CO Etching

by Chenyu Wang, Lihua Zhang, Hongzhou Yang, Jinfong Pan, Jingyue Liu, Charles Dotse, Yiliang Luan, Rui Gao, Cuikun Lin, Jun Zhang, James P. Kilcrease, Xiaodong Wen, Shouzhong Zou and Jiye Fang

TOC Graphic

Nano Letters
DOI: 10.1021/acs.nanolett.6b04731
13 Mar 13:30

Optimizing experimental parameters for the projection requirement in HAADF-STEM tomography

Publication date: June 2017
Source:Ultramicroscopy, Volume 177
Author(s): R. Aveyard, Z. Zhong, K.J. Batenburg, B. Rieger
Tomographic reconstruction algorithms offer a means by which a tilt-series of transmission images can be combined to yield a three dimensional model of the specimen. Conventional reconstruction algorithms assume that the measured signal is a linear projection of some property, typically the density, of the material. Here we report the use of multislice simulations to investigate the extent to which this assumption is met in HAADF-STEM imaging. The use of simulations allows for a systematic survey of a range of materials and microscope parameters to inform optimal experimental design. Using this approach it is demonstrated that the imaging of amorphous materials is in good agreement with the projection assumption in most cases. Images of crystalline specimens taken along zone-axes are found to be poorly suited for conventional linear reconstruction algorithms due to channelling effects which produce enhanced intensities compared with off-axis images, and poor compliance with the projection requirement. Off-axis images are found to be suitable for reconstruction, though they do not strictly meet the linearity requirement in most cases. It is demonstrated that microscope parameters can be selected to yield improved compliance with the projection requirement.

15 Feb 19:18

Optimization of STEM imaging conditions for cryo-tomography

by Aoyama K, Nagano K, Mitsuoka K.
<span class="paragraphSection"><div class="boxTitle">Abstract</div>For three-dimensional analysis of cryo-specimens using tomography at low and medium magnifications, the use of STEM images has some important advantages over TEM. A clear understanding of the electron dose in STEM is essential for optimized cryo-microscopy so a dose estimation technique for STEM imaging has been developed. The STEM convergence angle was shown to have a large impact on the image quality, in particular on the signal-to-noise ratio in the acquired images. Importantly, there is a clear trade-off between good STEM spatial resolution in the images with a large convergence angle and the signal-to-noise ratio, which is improved by reducing the convergence angle as much as possible. Based on this and the effects of varying specimen thickness, image magnification and acceleration voltage which were also evaluated, we discuss the optimal conditions for cryo-STEM tomography of biological specimens.</span>
19 Jan 19:46

Quantitative Three-Dimensional Characterization of Block Copolymer Directed Self-Assembly on Combined Chemical and Topographical Prepatterned Templates

by Tamar Segal-Peretz, Jiaxing Ren, Shisheng Xiong, Gurdaman Khaira, Alec Bowen, Leonidas E. Ocola, Ralu Divan, Manolis Doxastakis, Nicola J. Ferrier, Juan de Pablo and Paul F. Nealey

TOC Graphic

ACS Nano
DOI: 10.1021/acsnano.6b05657
17 Jan 19:30

Three-dimensional imaging of dislocation dynamics during the hydriding phase transformation

by A. Ulvestad

Nature Materials. doi:10.1038/nmat4842

Authors: A. Ulvestad, M. J. Welland, W. Cha, Y. Liu, J. W. Kim, R. Harder, E. Maxey, J. N. Clark, M. J. Highland, H. You, P. Zapol, S. O. Hruszkewycz & G. B. Stephenson

07 Jan 10:29

In situ liquid cell electron microscopy of Ag-Au galvanic replacement reactions

Nanoscale, 2017, 9,1271-1278
DOI: 10.1039/C6NR07293C, Paper
Eli A. Sutter, Peter W. Sutter
Galvanic replacement reactions are important as they transform nanoparticle templates into complex porous and hollow metal or alloy nanostructures with interesting properties for a variety of applications. We establish the conditions under which these reactions can be followed in real time by electron microscopy.
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20 Dec 04:53

A grand unified model for liganded gold clusters

by Wen Wu Xu

A grand unified model for liganded gold clusters

Nature Communications, Published online: 2 December 2016; doi:10.1038/ncomms13574

There is no one theoretical model that can explain the stability of all known liganded gold clusters. Here, the authors present a grand unified model, inspired by the quark model of particle physics, which describes gold clusters as combinations of stable triangular Au3(2e) and tetragonal Au4(2e) ‘composite particles’ built from gold atom ‘elementary particles’.

16 Dec 13:38

How precise can atoms of a nanocluster be located in 3D using a tilt series of scanning transmission electron microscopy images?

Publication date: October 2017
Source:Ultramicroscopy, Volume 181
Author(s): M. Alania, A. De Backer, I. Lobato, F.F. Krause, D. Van Dyck, A. Rosenauer, S. Van Aert
In this paper, we investigate how precise atoms of a small nanocluster can ultimately be located in three dimensions (3D) from a tilt series of images acquired using annular dark field (ADF) scanning transmission electron microscopy (STEM). Therefore, we derive an expression for the statistical precision with which the 3D atomic position coordinates can be estimated in a quantitative analysis. Evaluating this statistical precision as a function of the microscope settings also allows us to derive the optimal experimental design. In this manner, the optimal angular tilt range, required electron dose, optimal detector angles, and number of projection images can be determined.

15 Dec 23:48

3D multi-energy deconvolution electron microscopy

Nanoscale, 2017, 9,684-689
DOI: 10.1039/C6NR07991A, Paper
Michiel de Goede, Eric Johlin, Beniamino Sciacca, Faysal Boughorbel, Erik C. Garnett
We present a novel SEM technique using multiple beam energies and blind-source separation deconvolution to non-destructively retrieve a 3D representation of devices on thick substrates.
The content of this RSS Feed (c) The Royal Society of Chemistry
12 Dec 02:25

A bimodal tomographic reconstruction technique combining EDS-STEM and HAADF-STEM

Publication date: March 2017
Source:Ultramicroscopy, Volume 174
Author(s): Zhichao Zhong, Bart Goris, Remco Schoenmakers, Sara Bals, K. Joost Batenburg
A three-dimensional (3D) chemical characterization of nanomaterials can be obtained using tomography based on high angle annular dark field (HAADF) scanning transmission electron microscopy (STEM) or energy dispersive X-ray spectroscopy (EDS) STEM. These two complementary techniques have both advantages and disadvantages. The Z-contrast images have good image quality but lack robustness in the compositional analysis, while the elemental maps give more element-specific information, but at a low signal-to-noise ratio and a longer exposure time. Our aim is to combine these two types of complementary information in one single tomographic reconstruction process. Therefore, an imaging model is proposed combining both HAADF-STEM and EDS-STEM. Based on this model, the elemental distributions can be reconstructed using both types of information simultaneously during the reconstruction process. The performance of the new technique is evaluated using simulated data and real experimental data. The results demonstrate that combining two imaging modalities leads to tomographic reconstructions with suppressed noise and enhanced contrast.

21 Nov 00:03

A methodology for finding the optimal iteration number of the SIRT algorithm for quantitative Electron Tomography

Publication date: February 2017
Source:Ultramicroscopy, Volume 173
Author(s): Ana Okariz, Teresa Guraya, Maider Iturrondobeitia, Julen Ibarretxe
The SIRT (Simultaneous Iterative Reconstruction Technique) algorithm is commonly used in Electron Tomography to calculate the original volume of the sample from noisy images, but the results provided by this iterative procedure are strongly dependent on the specific implementation of the algorithm, as well as on the number of iterations employed for the reconstruction. In this work, a methodology for selecting the iteration number of the SIRT reconstruction that provides the most accurate segmentation is proposed. The methodology is based on the statistical analysis of the intensity profiles at the edge of the objects in the reconstructed volume. A phantom which resembles a a carbon black aggregate has been created to validate the methodology and the SIRT implementations of two free software packages (TOMOJ and TOMO3D) have been used.

11 Nov 17:51

Real-time detection and single-pass minimization of TEM objective lens astigmatism

Publication date: March 2017
Source:Journal of Structural Biology, Volume 197, Issue 3
Author(s): Rui Yan, Kunpeng Li, Wen Jiang
Minimization of the astigmatism of the objective lens is a critical daily instrument alignment task essential for high resolution TEM imaging. Fast and sensitive detection of astigmatism is needed to provide real-time feedback and adjust the stigmators to efficiently reduce astigmatism. Currently the method used by many microscopists is to visually examine the roundness of a diffractogram (Thon rings) and iteratively adjust the stigmators to make the Thon rings circular. This subjective method is limited by poor sensitivity and potentially biased by the astigmatism of human eyes. In this study, an s2 power spectra based method, s2stigmator, was developed to allow fast and sensitive detection of the astigmatism in TEM live images. The “radar”-style display provides real-time feedback to guide the adjustment of the objective lens stigmators. Such unique capability allowed us to discover the mapping of the two stigmators to the astigmatism amplitude and angle, which led us to develop a single-pass tuning strategy capable of significantly quicker minimization of the objective lens astigmatism.

18 Oct 13:16

Foil-hole and data image quality assessment in 3DEM: Towards high-throughput image acquisition in the electron microscope

Publication date: December 2016
Source:Journal of Structural Biology, Volume 196, Issue 3
Author(s): J. Vargas, E. Franken, C.O.S. Sorzano, J. Gomez-Blanco, R. Schoenmakers, A.J. Koster, J.M. Carazo
Automatic or semiautomatic data collection approaches on a transmission electron microscope (TEM) for Single Particle Analysis, capable of acquiring large datasets composed of only high quality images, are of great importance to obtain 3D density maps with the highest resolution possible. Typically, this task is performed by an experienced microscopist, who manually decides to keep or discard images according to subjective criteria. Therefore, this methodology is slow, intensive in human work and subjective. In this work, we propose a method to automatically or semiautomatically perform this image selection task. The approach is based on some simple, fast and effective image quality descriptors, which can be computed during acquisition, to characterize foil-hole and data images. The proposed approach has been used to evaluate the quality of different datasets consisting of foil-hole and data images obtained with a FEI Titan Krios electron microscope. The results show that the proposed method is very effective evaluating the quality of foil-hole and data images, as well as predicting the quality of the data images from the foil-hole images.

16 Oct 12:08

Near-Atomic Three-Dimensional Mapping for Site-Specific Chemistry of ‘Superbugs’

by Vahid R. Adineh, Ross K. W. Marceau, Tony Velkov, Jian Li and Jing Fu

TOC Graphic

Nano Letters
DOI: 10.1021/acs.nanolett.6b03409
07 Sep 09:39

Three dimensional mapping of Fe dopants in ceria nanocrystals using direct spectroscopic electron tomography

Publication date: December 2016
Source:Ultramicroscopy, Volume 171
Author(s): Bart Goris, Maria Meledina, Stuart Turner, Zhichao Zhong, K. Joost Batenburg, Sara Bals
Electron tomography is a powerful technique for the 3D characterization of the morphology of nanostructures. Nevertheless, resolving the chemical composition of complex nanostructures in 3D remains challenging and the number of studies in which electron energy loss spectroscopy (EELS) is combined with tomography is limited. During the last decade, dedicated reconstruction algorithms have been developed for HAADF-STEM tomography using prior knowledge about the investigated sample. Here, we will use the prior knowledge that the experimental spectrum of each reconstructed voxel is a linear combination of a well-known set of references spectra in a so-called direct spectroscopic tomography technique. Based on a simulation experiment, it is shown that this technique provides superior results in comparison to conventional reconstruction methods for spectroscopic data, especially for spectrum images containing a relatively low signal to noise ratio. Next, this technique is used to investigate the spatial distribution of Fe dopants in Fe:Ceria nanoparticles in 3D. It is shown that the presence of the Fe2+ dopants is correlated with a reduction of the Ce atoms from Ce4+ towards Ce3+. In addition, it is demonstrated that most of the Fe dopants are located near the voids inside the nanoparticle.

28 Jul 08:23

Thermally stable coexistence of liquid and solid phases in gallium nanoparticles

by Maria Losurdo

Nature Materials. doi:10.1038/nmat4705

Authors: Maria Losurdo, Alexandra Suvorova, Sergey Rubanov, Kurt Hingerl & April S. Brown

11 Jul 09:23

3D Visualization of the Iron Oxidation State in FeO/Fe3O4 Core–Shell Nanocubes from Electron Energy Loss Tomography

by Pau Torruella, Raúl Arenal, Francisco de la Peña, Zineb Saghi, Lluís Yedra, Alberto Eljarrat, Lluís López-Conesa, Marta Estrader, Alberto López-Ortega, Germán Salazar-Alvarez, Josep Nogués, Caterina Ducati, Paul A. Midgley, Francesca Peiró and Sonia Estradé
Yichi_Wang

EEL spectrum preprocessed by ICA+PCA, then EELS tilt tomography, only half data were used for reconstruction due to beam damage.

TOC Graphic

Nano Letters
DOI: 10.1021/acs.nanolett.6b01922
06 Jul 19:33

Assessing electron beam sensitivity for SrTiO3 and La0.7Sr0.3MnO3 using electron energy loss spectroscopy

Publication date: October 2016
Source:Ultramicroscopy, Volume 169
Author(s): Magnus Nord, Per Erik Vullum, Ingrid Hallsteinsen, Thomas Tybell, Randi Holmestad
Thresholds for beam damage have been assessed for La0.7Sr0.3MnO3 and SrTiO3 as a function of electron probe current and exposure time at 80 and 200kV acceleration voltage. The materials were exposed to an intense electron probe by aberration corrected scanning transmission electron microscopy (STEM) with simultaneous acquisition of electron energy loss spectroscopy (EELS) data. Electron beam damage was identified by changes of the core loss fine structure after quantification by a refined and improved model based approach. At 200kV acceleration voltage, damage in SrTiO3 was identified by changes both in the EEL fine structure and by contrast changes in the STEM images. However, the changes in the STEM image contrast as introduced by minor damage can be difficult to detect under several common experimental conditions. No damage was observed in SrTiO3 at 80kV acceleration voltage, independent of probe current and exposure time. In La0.7Sr0.3MnO3, beam damage was observed at both 80 and 200kV acceleration voltages. This damage was observed by large changes in the EEL fine structure, but not by any detectable changes in the STEM images. The typical method to validate if damage has been introduced during acquisitions is to compare STEM images prior to and after spectroscopy. Quantifications in this work show that this method possibly can result in misinterpretation of beam damage as changes of material properties.