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01 Dec 16:04

Host Cytosolic Glutathione Sensing by a Membrane Histidine Kinase Activates the Type VI Secretion System in an Intracellular Bacterium

by Jocelyn Wong, Yahua Chen, Yunn-Hwen Gan
B. pseudomallei type VI secretion system, which is activated when bacteria are within the host cytosol, is critical for virulence. However, the activating signal is unknown. Wong et al. show that monomer-to-dimer conversion of a bacterial membrane histidine kinase by cytosolic host glutathione activates type VI secretion.
19 Jun 01:56

[Report] Phthalimide conjugation as a strategy for in vivo target protein degradation

by Georg E. Winter
The development of effective pharmacological inhibitors of multidomain scaffold proteins, notably transcription factors, is a particularly challenging problem. In part, this is because many small-molecule antagonists disrupt the activity of only one domain in the target protein. We devised a chemical strategy that promotes ligand-dependent target protein degradation using as an example the transcriptional coactivator BRD4, a protein critical for cancer cell growth and survival. We appended a competitive antagonist of BET bromodomains to a phthalimide moiety to hijack the cereblon E3 ubiquitin ligase complex. The resultant compound, dBET1, induced highly selective cereblon-dependent BET protein degradation in vitro and in vivo and delayed leukemia progression in mice. A second series of probes resulted in selective degradation of the cytosolic protein FKBP12. This chemical strategy for controlling target protein stability may have implications for therapeutically targeting previously intractable proteins. Authors: Georg E. Winter, Dennis L. Buckley, Joshiawa Paulk, Justin M. Roberts, Amanda Souza, Sirano Dhe-Paganon, James E. Bradner
17 Jun 17:54

Small-Molecule-Mediated Degradation of the Androgen Receptor Through Hydrophobic Tagging

by Jeffrey L. Gustafson, Taavi K. Neklesa, Carly S. Cox, Anke G. Roth, Dennis L. Buckley, Hyun Seop Tae, Thomas B. Sundberg, D. Blake Stagg, John Hines, Donald P. McDonnell, John D. Norris, Craig M. Crews

Abstract

Androgen receptor (AR)-dependent transcription is a major driver of prostate tumor cell proliferation. Consequently, it is the target of several antitumor chemotherapeutic agents, including the AR antagonist MDV3100/enzalutamide. Recent studies have shown that a single AR mutation (F876L) converts MDV3100 action from an antagonist to an agonist. Here we describe the generation of a novel class of selective androgen receptor degraders (SARDs) to address this resistance mechanism. Molecules containing hydrophobic degrons linked to small-molecule AR ligands induce AR degradation, reduce expression of AR target genes and inhibit proliferation in androgen-dependent prostate cancer cell lines. These results suggest that selective AR degradation may be an effective therapeutic prostate tumor strategy in the context of AR mutations that confer resistance to second-generation AR antagonists.

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Making the problem go away: Most prostate tumor growth is driven by the action of the androgen receptor (AR). Resistance to current chemotherapies for prostate cancer can occur when the androgen receptor is either overexpressed or mutated. Coupling of an AR agonist to an adamantyl “hydrophobic tag” resulted in a molecule that induces AR degradation, even in drug-resistant prostate tumor cells.

17 Jun 03:35

Selective targeting of Mycobacterium smegmatis with trehalose-functionalized nanoparticles

Chem. Commun., 2015, 51,12028-12031
DOI: 10.1039/C5CC04251H, Communication
Kalana W. Jayawardana, H. Surangi N. Jayawardena, Samurdhi A. Wijesundera, Thareendra De Zoysa, Madanodaya Sundhoro, Mingdi Yan
Trehalose conjugated nanomaterials showed strong interactions with Mycobacterium smegmatis. Furthermore, these nanomaterials interacted only with mycobacteria on M. smegmatis-treated A549 cells.
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16 Jun 14:07

Synthesis of Unprotected Linear or Cyclic O-Acyl Isopeptides in Water Using Bis(2-sulfanylethyl)amido Peptide Ligation

by Rémi Desmet, Mindaugas Pauzuolis, Emmanuelle Boll, Hervé Drobecq, Laurent Raibaut and Oleg Melnyk

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Organic Letters
DOI: 10.1021/acs.orglett.5b01614
16 Jun 13:27

Biosynthetic Studies of Telomycin Reveal New Lipopeptides with Enhanced Activity

by Chengzhang Fu, Lena Keller, Armin Bauer, Mark Brönstrup, Alexandre Froidbise, Peter Hammann, Jennifer Herrmann, Guillaume Mondesert, Michael Kurz, Matthias Schiell, Dietmar Schummer, Luigi Toti, Joachim Wink and Rolf Müller

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Journal of the American Chemical Society
DOI: 10.1021/jacs.5b01794
08 Jun 23:55

Liquid-crystalline ordering of antimicrobial peptide–DNA complexes controls TLR9 activation

by Nathan W. Schmidt

Nature Materials. doi:10.1038/nmat4298

Authors: Nathan W. Schmidt, Fan Jin, Roberto Lande, Tine Curk, Wujing Xian, Calvin Lee, Loredana Frasca, Daan Frenkel, Jure Dobnikar, Michel Gilliet & Gerard C. L. Wong

Double-stranded DNA (dsDNA) can trigger the production of type I interferon (IFN) in plasmacytoid dendritic cells (pDCs) by binding to endosomal Toll-like receptor-9 (TLR9; refs , , , , ). It is also known that the formation of DNA–antimicrobial peptide complexes can lead to autoimmune diseases via amplification of pDC activation. Here, by combining X-ray scattering, computer simulations, microscopy and measurements of pDC IFN production, we demonstrate that a broad range of antimicrobial peptides and other cationic molecules cause similar effects, and elucidate the criteria for amplification. TLR9 activation depends on both the inter-DNA spacing and the multiplicity of parallel DNA ligands in the self-assembled liquid-crystalline complex. Complexes with a grill-like arrangement of DNA at the optimum spacing can interlock with multiple TLR9 like a zipper, leading to multivalent electrostatic interactions that drastically amplify binding and thereby the immune response. Our results suggest that TLR9 activation and thus TLR9-mediated immune responses can be modulated deterministically.

08 Jun 23:54

UV-Induced Tetrazole-Thiol Reaction for Polymer Conjugation and Surface Functionalization

by Wenqian Feng, Linxian Li, Chengwu Yang, Alexander Welle, Oliver Trapp, Pavel A. Levkin

Abstract

A UV-induced 1,3-dipolar nucleophilic addition of tetrazoles to thiols is described. Under UV irradiation the reaction proceeds rapidly at room temperature, with high yields, without a catalyst, and in both polar protic and aprotic solvents, including water. This UV-induced tetrazole-thiol reaction was successfully applied for the synthesis of small molecules, protein modification, and rapid and facile polymer–polymer conjugation. The reaction has also been demonstrated for the formation of micropatterns by site-selective surface functionalization. Superhydrophobic–hydrophilic micropatterns were successfully created by sequential modifications of a tetrazole-modified porous polymer surface with hydrophobic and hydrophilic thiols. A biotin-functionalized surface could be fabricated in aqueous solutions under long-wavelength UV irradiation.

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Without catalyst: A UV-induced tetrazole-thiol reaction is reported. This reaction proceeds rapidly at ambient temperature under UV light in different solvents including water with high yield and without a catalyst. The reaction has been demonstrated for small-molecule and polymer–polymer conjugation, as well as for rapid site-selective surface functionalization and patterning.

08 Jun 11:46

Design, synthesis and biological evaluation of novel dimeric and tetrameric cRGD-paclitaxel conjugates for integrin-assisted drug delivery

Org. Biomol. Chem., 2015, 13,7530-7541
DOI: 10.1039/C5OB00497G, Paper
A. Bianchi, D. Arosio, P. Perego, M. De Cesare, N. Carenini, N. Zaffaroni, M. De Matteo, L. Manzoni
Novel RGD-PTX multivalent conjugates, presenting enhanced binding for an [small alpha]v[small beta]3 integrin, have been reported. In vivo evaluation of 3b showed tumor growth inhibition through administering one-third of the PTX dose.
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05 Jun 16:47

Total Synthesis and Biological Investigation of (−)-Promysalin

by Andrew D. Steele, Kyle W. Knouse, Colleen E. Keohane and William M. Wuest

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Journal of the American Chemical Society
DOI: 10.1021/jacs.5b04767
05 Jun 14:15

[Research Article] Targeting DnaN for tuberculosis therapy using novel griselimycins

by Angela Kling
The discovery of Streptomyces-produced streptomycin founded the age of tuberculosis therapy. Despite the subsequent development of a curative regimen for this disease, tuberculosis remains a worldwide problem, and the emergence of multidrug-resistant Mycobacterium tuberculosis has prioritized the need for new drugs. Here we show that new optimized derivatives from Streptomyces-derived griselimycin are highly active against M. tuberculosis, both in vitro and in vivo, by inhibiting the DNA polymerase sliding clamp DnaN. We discovered that resistance to griselimycins, occurring at very low frequency, is associated with amplification of a chromosomal segment containing dnaN, as well as the ori site. Our results demonstrate that griselimycins have high translational potential for tuberculosis treatment, validate DnaN as an antimicrobial target, and capture the process of antibiotic pressure-induced gene amplification. Authors: Angela Kling, Peer Lukat, Deepak V. Almeida, Armin Bauer, Evelyne Fontaine, Sylvie Sordello, Nestor Zaburannyi, Jennifer Herrmann, Silke C. Wenzel, Claudia König, Nicole C. Ammerman, María Belén Barrio, Kai Borchers, Florence Bordon-Pallier, Mark Brönstrup, Gilles Courtemanche, Martin Gerlitz, Michel Geslin, Peter Hammann, Dirk W. Heinz, Holger Hoffmann, Sylvie Klieber, Markus Kohlmann, Michael Kurz, Christine Lair, Hans Matter, Eric Nuermberger, Sandeep Tyagi, Laurent Fraisse, Jacques H. Grosset, Sophie Lagrange, Rolf Müller
03 Jun 14:12

Optogenetic control of contractile function in skeletal muscle

by Tobias Bruegmann

Article

Nerve damage can lead to skeletal muscle paralysis. The authors show that localized photostimulation of skeletal muscle expressing the light-sensitive channel Channelrhodopsin-2 generates contraction in the absence of neural impulses and prove that this strategy can be used for optogenetic opening of explanted murine vocal cords.

Nature Communications doi: 10.1038/ncomms8153

Authors: Tobias Bruegmann, Tobias van Bremen, Christoph C. Vogt, Thorsten Send, Bernd K. Fleischmann, Philipp Sasse

02 Jun 20:34

Peptidoglycan Modifications Tune the Stability and Function of the Innate Immune Receptor Nod2

by James E. Melnyk, Vishnu Mohanan, Amy K. Schaefer, Ching-Wen Hou and Catherine Leimkuhler Grimes
Marcos Pires

woah - just wrote a grant last month very close to this idea... so i guess it works

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Journal of the American Chemical Society
DOI: 10.1021/jacs.5b01607
02 Jun 15:46

Design, Synthesis, and Functional Evaluation of CO-Releasing Molecules Triggered by Penicillin G Amidase as a Model Protease

by Nikolay S. Sitnikov, Yingchun Li, Danfeng Zhang, Benito Yard, Hans-Günther Schmalz

Abstract

Protease-triggered CO-releasing molecules (CORMs) were developed. The viability of the approach was demonstrated through the synthesis of compounds consisting of an η4-oxydiene–Fe(CO)3 moiety connected to a penicillin G amidase (PGA)-cleavable unit through a self-immolative linker. The rate of PGA-induced hydrolysis was investigated by HPLC analysis and the subsequent CO release was quantitatively assessed through headspace gas chromatography. In an in vitro assay with human endothelial cells, typical biological effects of CO, that is, inhibition of the inflammatory response and the induction of heme oxygenase-1 expression, were observed only upon co-administration of the CORM and PGA. This work forms a promising basis for the future development of protease-specific CORMs for potential medicinal applications.

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Please release me, let me CO: As an important step towards the development of protease-triggered CO-releasing molecules (CORMs), oxydiene–Fe(CO)3 complexes bearing a penicillin G amidase (PGA)-cleavable side chain connected to the organometallic unit through a self-immolative linker were designed and synthesized. PGA-induced CO release was confirmed by headspace GC and by inhibition of VCAM-1 expression in a cell-based assay.

02 Jun 15:45

Multivalent Antigens for Promoting B and T Cell Activation

by Nitasha R. Bennett, Daniel B. Zwick, Adam H. Courtney and Laura L. Kiessling

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ACS Chemical Biology
DOI: 10.1021/acschembio.5b00239
02 Jun 15:45

Chemical Protein Synthesis Using a Second-Generation N-Acylurea Linker for the Preparation of Peptide-Thioester Precursors

by Juan B. Blanco-Canosa, Brunello Nardone, Fernando Albericio and Philip E. Dawson

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Journal of the American Chemical Society
DOI: 10.1021/jacs.5b03504
02 Jun 15:45

CalFluors: A Universal Motif for Fluorogenic Azide Probes across the Visible Spectrum

by Peyton Shieh, Vivian T. Dien, Brendan J. Beahm, Joseph M. Castellano, Tony Wyss-Coray and Carolyn R. Bertozzi

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Journal of the American Chemical Society
DOI: 10.1021/jacs.5b02383
01 Jun 20:29

A Caged Electrophilic Probe for Global Analysis of Cysteine Reactivity in Living Cells

by Masahiro Abo and Eranthie Weerapana

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Journal of the American Chemical Society
DOI: 10.1021/jacs.5b04350
01 Jun 17:49

An electrochemical clamp assay for direct, rapid analysis of circulating nucleic acids in serum

by Jagotamoy Das

Nature Chemistry. doi:10.1038/nchem.2270

Authors: Jagotamoy Das, Ivaylo Ivanov, Laura Montermini, Janusz Rak, Edward H. Sargent & Shana O. Kelley

The analysis of circulating cell-free nucleic acids (cfNA) in the blood of cancer patients permits the analysis of tumour mutations without requiring invasive sampling of tissue. Now, the development of an electrochemical assay that uses a collection of clamp molecules to sequester interfering cfNAs enables the accurate detection of mutated sequences in serum collected from people with lung cancer or melanoma.

01 Jun 16:42

Diaminodiacid Bridges to Improve Folding and Tune the Bioactivity of Disulfide-Rich Peptides

by Ye Guo, De-Meng Sun, Feng-Liang Wang, Yao He, Lei Liu, Chang-Lin Tian

Abstract

Disulfide-rich peptides containing three or more disulfide bonds are promising therapeutic and diagnostic agents, but their preparation is often limited by the tedious and low-yielding folding process. We found that a single cystine-to-diaminodiacid replacement could significantly increase the folding efficiency of disulfide-rich peptides and thus improve their production yields. The practicality of this strategy was demonstrated by the synthesis and folding of derivatives of the μ-conotoxin SIIIA, the preclinical hormone hepcidin, and the trypsin inhibitor EETI-II. NMR and X-ray crystallography studies confirmed that these derivatives of disulfide-rich peptide retained the correct three-dimensional conformations. Moreover, the cystine-to-diaminodiacid replacement enabled structural tuning, thereby leading to an EETI-II derivative with higher bioactivity than the native peptide.

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Bridging the gap: A single cystine-to-diaminodiacid replacement can enable the efficient production and optimization of disulfide-rich peptides. The practicability and advantages of this method were demonstrated through studies with the μ-conotoxin SIIIA, the hormone hepcidin, and the trypsin inhibitor EETI-II.

29 May 13:51

Evaluation of the antibacterial and antibiofilm activities of novel CRAMP-vancomycin conjugates with diverse linkers

Marcos Pires

something we had talked about doing.....

Org. Biomol. Chem., 2015, 13,7477-7486
DOI: 10.1039/C5OB00830A, Paper
Nigam M. Mishra, Yves Briers, Chris Lamberigts, Hans Steenackers, Stijn Robijns, Bart Landuyt, Jos Vanderleyden, Liliane Schoofs, Rob Lavigne, Walter Luyten, Erik V. Van der Eycken
Conjugates of CRAMP (cathelicidin-related antimicrobial peptides) and vancomycin were synthesised using click chemistry with diverse hydrophilic and hydrophobic linkers.
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26 May 16:06

Photoswitchable fatty acids enable optical control of TRPV1

by James Allen Frank

Article

Fatty acids are ancient lipids with numerous functions, from metabolic processes as a source of energy to structural and signalling roles within cell membranes. Here, the authors present azobenzene-modified fatty acids and their application as photoswitchable agonists of the Vanilloid Receptor 1.

Nature Communications doi: 10.1038/ncomms8118

Authors: James Allen Frank, Mirko Moroni, Rabih Moshourab, Martin Sumser, Gary R. Lewin, Dirk Trauner

22 May 17:46

Targeting virulence: salmochelin modification tunes the antibacterial activity spectrum of [small beta]-lactams for pathogen-selective killing of Escherichia coli

Chem. Sci., 2015, 6,4458-4471
DOI: 10.1039/C5SC00962F, Edge Article
Open Access Open Access
Creative Commons Licence&nbsp This article is licensed under a Creative Commons Attribution 3.0 Unported Licence.
Phoom Chairatana, Tengfei Zheng, Elizabeth M. Nolan
New antibiotics are required to treat bacterial infections and counteract the emergence of antibiotic resistance.
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22 May 16:35

Metabolic remodeling of bacterial surfaces via tetrazine ligations

Chem. Commun., 2015, 51,10330-10333
DOI: 10.1039/C5CC01693B, Communication
S. E. Pidgeon, M. M. Pires
Bioorthogonal click ligations are extensively used for the introduction of functional groups in biological systems.
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22 May 16:34

New peptide architectures through C–H activation stapling between tryptophan–phenylalanine/tyrosine residues

by Lorena Mendive-Tapia

Article

Macrocyclic, constrained peptides show promise in therapeutic applications due to the stable and defined conformations that can be produced. Here, the authors report a method to form macrocyclic peptides through C–H activation on tryptophan and coupling with iodo-substituted aryl amino acids

Nature Communications doi: 10.1038/ncomms8160

Authors: Lorena Mendive-Tapia, Sara Preciado, Jesús García, Rosario Ramón, Nicola Kielland, Fernando Albericio, Rodolfo Lavilla

19 May 14:45

A novel lipid II flippase [Microbiology]

by Meeske, A. J., Sham, L.-T., Kimsey, H., Koo, B.-M., Gross, C. A., Bernhardt, T. G., Rudner, D. Z.
Bacterial surface polysaccharides are synthesized from lipid-linked precursors at the inner surface of the cytoplasmic membrane before being translocated across the bilayer for envelope assembly. Transport of the cell wall precursor lipid II in Escherichia coli requires the broadly conserved and essential multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily member MurJ. Here, we...
18 May 19:51

The Tipper–Strominger Hypothesis and Triggering of Allostery in Penicillin-Binding Protein 2a of Methicillin-Resistant Staphylococcus aureus (MRSA)

by Jennifer Fishovitz, Negin Taghizadeh, Jed F. Fisher, Mayland Chang and Shahriar Mobashery

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Journal of the American Chemical Society
DOI: 10.1021/jacs.5b01374
13 May 14:14

Anammox Planctomycetes have a peptidoglycan cell wall

by Muriel C.F. van Teeseling

Article

Planctomycetes are unusual bacteria with complex intracellular compartments and an apparent lack of peptidoglycan in their cell walls. Here, van Teeseling et al . show that the cell wall of an anammox planctomycete does contain peptidoglycan, and propose to redefine planctomycetes as Gram-negative bacteria.

Nature Communications doi: 10.1038/ncomms7878

Authors: Muriel C.F. van Teeseling, Rob J. Mesman, Erkin Kuru, Akbar Espaillat, Felipe Cava, Yves V. Brun, Michael S. VanNieuwenhze, Boran Kartal, Laura van Niftrik

13 May 14:14

Multiple Attack on Bacteria by the New Antibiotic Teixobactin

by Franz von Nussbaum, Roderich D. Süssmuth
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News from the antibiotics pipeline: The discovery of a depsipeptide-type lipid II binder, isolated from a previously unknown bacterium, raises hopes in the battle against multiresistant staphylococci.

08 May 13:20

[Report] Engineering of a light-gated potassium channel

by Cristian Cosentino
The present palette of opsin-based optogenetic tools lacks a light-gated potassium (K+) channel desirable for silencing of excitable cells. Here, we describe the construction of a blue-light–induced K+ channel 1 (BLINK1) engineered by fusing the plant LOV2-Jα photosensory module to the small viral K+ channel Kcv. BLINK1 exhibits biophysical features of Kcv, including K+ selectivity and high single-channel conductance but reversibly photoactivates in blue light. Opening of BLINK1 channels hyperpolarizes the cell to the K+ equilibrium potential. Ectopic expression of BLINK1 reversibly inhibits the escape response in light-exposed zebrafish larvae. BLINK1 therefore provides a single-component optogenetic tool that can establish prolonged, physiological hyperpolarization of cells at low light intensities. Authors: Cristian Cosentino, Laura Alberio, Sabrina Gazzarrini, Marco Aquila, Edoardo Romano, Solei Cermenati, Paolo Zuccolini, Jan Petersen, Monica Beltrame, James L. Van Etten, John M. Christie, Gerhard Thiel, Anna Moroni