24 Mar 00:17
by Mathieu F. Chellat, Luka Raguž, Rainer Riedl
Abstract
Finding strategies against the development of antibiotic resistance is a major global challenge for the life sciences community and for public health. The past decades have seen a dramatic worldwide increase in human-pathogenic bacteria that are resistant to one or multiple antibiotics. More and more infections caused by resistant microorganisms fail to respond to conventional treatment, and in some cases, even last-resort antibiotics have lost their power. In addition, industry pipelines for the development of novel antibiotics have run dry over the past decades. A recent world health day by the World Health Organization titled “Combat drug resistance: no action today means no cure tomorrow” triggered an increase in research activity, and several promising strategies have been developed to restore treatment options against infections by resistant bacterial pathogens.
No action today, no cure tomorrow: The development and spread of antibiotic resistance is a global threat to public health. After decades of declining interest in the development of new therapies against infections caused by pathogenic bacteria, a revitalization of antibiotic research has recently taken place. Structure-based and mechanism-based approaches, as well as interventions at the genetic level, hold great promise for conquering antibiotic resistance.
24 Mar 00:01
Scientists from the University of Leeds have solved a 25-year-old question about how a family of proteins allow bacteria to resist the effects of certain antibiotics.
16 Mar 10:15
by Martinelli, D. J., Pavelka, M. S.
Mycobacteria possess a series of Rip peptidoglycan endopeptidases that have been characterized in varying detail. The RipA and RipB proteins have been extensively studied and are D,L-endopeptidases, and RipA has been considered essential to M. smegmatis and M. tuberculosis. We show here that the ripA and ripB genes are individually dispensable in M. smegmatis and that at least one of the genes must be expressed for viability. We characterized in-frame deletion mutants of ripA and ripB and found that both strains exhibited increased susceptibility to a limited number of antibiotics and to detergent, while only the ripA mutant displayed hypersusceptibility to lysozyme. We also constructed and characterized ripD and ripA ripD mutants and found that the single mutant had only an intermediate lysozyme hypersusceptibility phenotype compared to wild type cells, while loss of ripD in the ripA background partially rescued the antibiotic and lysozyme phenotypes of the ripA mutant.
Importance This manuscript shows that the RipA endopeptidase, which has been considered essential for cell division in certain mycobacteria, is not essential, but that at least it, or a similar protein, RipB, must be expressed by the bacteria for viability. This work is the first description of single deletion mutants of RipA, RipB, and a novel endopeptidase-like protein, RipD.
14 Mar 22:29
by Zongjun Qiao and Xuefeng Jiang

Organic Letters
DOI: 10.1021/acs.orglett.6b00324
13 Mar 20:53
by Rocío Falcón, Alba Martínez, Eliseo Albert, Silvia Madrid, Rosa Oltra, Estela Giménez, Mario Soriano, Víctor Vinuesa, Daniel Gozalbo, María Luisa Gil, David Navarro
Staphylococcus aureus bacteraemia is a common nosocomial and community-acquired infection associated with high morbidity and mortality [1]. Vancomycin minimum inhibitory concentrations (MICs) at the upper end of the susceptible range (MIC≥1.5mg/L) as measured by Etest both for meticillin-resistant S. aureus (MRSA) and meticillin-susceptible S. aureus (MSSA) isolates have been associated with poor clinical outcomes of bloodstream infections treated with vancomycin and even with β-lactam antibiotics [2–9].
09 Mar 20:22
Scientists discover compounds that restore antibiotic efficacy against drug-resistant superbugs.
09 Mar 15:02
by Alexander A. Vinogradov, Mark D. Simon and Bradley L. Pentelute

Organic Letters
DOI: 10.1021/acs.orglett.5b03625
09 Mar 14:30
Chem. Commun., 2016, 52,6060-6063
DOI: 10.1039/C5CC10249A, Communication

Open Access
Anish Parmar, Abhishek Iyer, Charlotte S. Vincent, Dorien Van Lysebetten, Stephen H. Prior, Annemieke Madder, Edward J. Taylor, Ishwar Singh
Efficient total syntheses of teixobactin analogues and their structure activity relationships are reported. The advantages of the synthetic approach are a high yield (22% for analogue 1), key step of the macrocyclisation achieved in 60 minutes.
The content of this RSS Feed (c) The Royal Society of Chemistry
04 Mar 13:04
Genetically engineered immune cells are saving the lives of cancer patients. That may be just the start.
29 Feb 13:02
In what is being heralded as a groundbreaking discovery, scientists led by Monash and Walter and Eliza Hall Institute researcher, Thomas Naderer and James Vince, have shown that drugs, originally developed to kill cancer cells, can also prevent infectious diseases that are difficult to treat with common antibiotics.
26 Feb 20:30
by Ian Glassford, Christiana N. Teijaro, Samer S. Daher, Amy Weil, Meagan C. Small, Shiv K. Redhu, Dennis J. Colussi, Marlene A. Jacobson, Wayne E. Childers, Bettina Buttaro, Allen W. Nicholson, Alexander D. MacKerell, Barry S. Cooperman and Rodrigo B. Andrade

Journal of the American Chemical Society
DOI: 10.1021/jacs.5b13008
20 Feb 01:48
by Nikolay V. Dokholyan

Chemical Reviews
DOI: 10.1021/acs.chemrev.5b00544
19 Feb 20:37
by Chuanyong Zong, Yan Zhao, Haipeng Ji, Xue Han, Jixun Xie, Juanjuan Wang, Yanping Cao, Shichun Jiang, Conghua Lu
Abstract
Periodic wrinkling across different scales has received considerable attention because it not only represents structure failure but also finds wide applications. How to prevent wrinkling or create desired wrinkling patterns is non-trivial because the dynamic evolution of wrinkles is a highly nonlinear problem. Herein, we report a simple yet powerful method to dynamically tune and/or erase wrinkling patterns with visible light. The light-induced photoisomerization of azobenzene units in azopolymer films leads to stress release and consequently to the erasure of the wrinkles. The wrinkles in unexposed regions are also affected and oriented perpendicular to the exposed boundary during the stress reorganization. Theoretical models were developed to understand the dynamics of the reversible photoisomerization-induced wrinkle evolution. This method can be applied for designing functional materials/devices, for example, for the reversible optical writing/erasure of information as demonstrated here.
Surface wrinkles on azopolymer films can be optically erased by visible-light irradiation. The rapid reversible photoisomerization of the azobenzene units generates a significant local nanoscale force throughout the film, which leads to stress release and erasure of the wrinkles. Highly ordered wrinkling patterns with well-defined microstructures were fabricated by selective light exposure.
18 Feb 12:15
Shahper N. Khan, Asad U. Khan
17 Feb 23:59
by David Wraith
Nature advance online publication 17 February 2016. doi:10.1038/nature17300
Author: David Wraith
Nanoparticles coated with fragments of the body's own proteins are shown to induce T cells of the immune system to adopt regulatory functions that suppress autoimmune reactions involving these self-antigens.
16 Feb 21:17
Tackling antibiotic resistance on only one front is a waste of time because resistant genes are freely crossing environmental, agricultural and clinical boundaries, new research has shown.
16 Feb 17:50
by Dominique Lelièvre, Victor P. Terrier, Agnès F. Delmas and Vincent Aucagne

Organic Letters
DOI: 10.1021/acs.orglett.5b03612
16 Feb 13:42
Chem. Sci., 2016, 7,3317-3324
DOI: 10.1039/C5SC03882K, Edge Article

Open Access
Julian Vastl, Rendy Kartika, Kichul Park, Art E. Cho, David A. Spiegel
We introduce a modular synthetic procedure to produce a new class of synthetic oligomers called peptidines composed of repeating di-substituted glycine-derived amidines.
The content of this RSS Feed (c) The Royal Society of Chemistry
16 Feb 10:37
by Bijoyananda Mishra, Mahesh Neralkar, Srinivas Hotha
Abstract
Oligosaccharide synthesis is still a challenging task despite the advent of modern glycosidation techniques. Herein, alkynyl glycosyl carbonates are shown to be stable glycosyl donors that can be activated catalytically by gold and silver salts at 25 °C in just 15 min to produce glycosides in excellent yields. Benzoyl glycosyl carbonate donors are solid compounds with a long shelf life. This operationally simple protocol was found to be highly efficient for the synthesis of nucleosides, amino acids, and phenolic and azido glycoconjugates. Repeated use of the carbonate glycosidation method enabled the highly convergent synthesis of tridecaarabinomannan in a rapid manner.
Donors that just keep giving: Stable alkynyl carbonate glycosides were identified as excellent glycosyl donors that can be activated by a Au–Ag bimetallic catalyst for the rapid synthesis of glycosides, nucleosides, and oligosaccharides under mild conditions. Repeated glycosidation reactions with carbonate glycosyl donors enabled the highly convergent synthesis of a target tridecasaccharide.
13 Feb 12:34
Scientists identify the brain circuits with which newly hatched nematodes form and retrieve a lifelong aversive olfactory memory.
12 Feb 19:31
by Patricia A. Spears, Edward A. Havell, Terri S. Hamrick, John B. Goforth, Alexandra L. Levine, S. Thomas Abraham, Christian Heiss, Parastoo Azadi, Paul E. Orndorff
Summary
Wall teichoic acid (WTA) comprises a class of glycopolymers covalently attached to the peptidoglycan of gram positive bacteria. In Listeria monocytogenes, mutations that prevent addition of certain WTA decorating sugars are attenuating. However, the steps required for decoration and the pathogenic process interrupted are not well described. We systematically examined the requirement for WTA galactosylation in a mouse oral-virulent strain by first creating mutations in four genes whose products conferred resistance to a WTA-binding bacteriophage. WTA biochemical and structural studies indicated that galactosylated WTA was directly required for bacteriophage adsorption and that mutant WTA lacked appreciable galactose in all except one mutant – which retained a level ca. 7% of the parent. All mutants were profoundly attenuated in orally infected mice and were impaired in cell-to-cell spread in vitro. Confocal microscopy of cytosolic mutants revealed that all expressed ActA on their cell surface and formed actin tails with a frequency similar to the parent. However, the mutant tails were significantly shorter – suggesting a defect in actin based motility. Roles for the gene products in WTA galactosylation are proposed. Identification and interruption of WTA decoration pathways may provide a general strategy to discover non-antibiotic therapeutics for gram positive infections. © 2016 John Wiley & Sons Ltd
Phage resistant (ΦR) Listeria monocytogenes mutants (green) exhibit short actin tails (red) during cytosolic growth, and spread cell-to-cell poorly compared to the parent. Phage resistance was associated with the absence of a single decorating sugar (galactose) on wall teichoic acid (WTA). The mutants were additionally dramatically attenuated in a mouse oral infection model. A hypothetical pathway for WTA galactosylation is proposed.
11 Feb 00:11
by Anna M. Arnaudo, A. James Link and Benjamin A. Garcia

ACS Chemical Biology
DOI: 10.1021/acschembio.5b00816
04 Feb 11:53
Publication date: May 2016
Source:Biochimica et Biophysica Acta (BBA) - Biomembranes, Volume 1858, Issue 5
Author(s): Thomas Gutsmann
Mycobacteria can cause different severe health problems, including tuberculosis (TB). The treatment of TB with conventional antibiotics is successful, however, the number of multi-drug and extensively-drug resistant Mycobacterium tuberculosis strains increases. Moreover, many classical antimycobacterial antibiotics have severe side effects. Therefore, antimicrobial peptides (AMPs) seem to be good candidates for new therapeutic strategies. On the one hand AMPs can be used as a single drug or in combination with conventional antibiotics to directly kill mycobacteria, or on the other hand to act as immunstimulatory agents. This review summarizes the findings on the role of endogenous human AMPs being involved in TB, the antimycobacterial activity of various AMPs, and the molecular modes of action. Most active AMPs interact with the mycobacterial cell envelope and in particular with the mycomembrane and the plasma membrane. The mycomembrane is a very rigid membrane probably leading to a lower activity of the AMPs against mycobacteria as compared to other Gram-negative or Gram-positive bacteria. For some AMPs also other targets have been identified. Because of the complex environment of intracellular mycobacteria being trapped in the phagosome, within the macrophage, within the granuloma, within the lung, the external administration of AMPs in the latent phase of TB is a challenge. However, in the acute phase the AMPs can attack mycobacteria in a direct way. This article is part of a Special Issue entitled: Antimicrobial peptides edited by Karl Lohner and Kai Hilpert.
Graphical abstract
03 Feb 15:30
by Mark Welch, J. L., Rossetti, B. J., Rieken, C. W., Dewhirst, F. E., Borisy, G. G.
The spatial organization of complex natural microbiomes is critical to understanding the interactions of the individual taxa that comprise a community. Although the revolution in DNA sequencing has provided an abundance of genomic-level information, the biogeography of microbiomes is almost entirely uncharted at the micron scale. Using spectral imaging fluorescence...
03 Feb 00:08
by Scott H. Medina, Stephen E. Miller, Allison I. Keim, Alexander P. Gorka, Martin J. Schnermann, Joel P. Schneider
Abstract
Many cell-penetrating peptides (CPPs) fold at cell surfaces, adopting α- or β-structure that enable their intracellular transport. However, the same structural folds that facilitate cellular entry can also elicit potent membrane-lytic activity, limiting their use in delivery applications. Further, a distinct CPP can enter cells through many mechanisms, often leading to endosomal entrapment. Herein, we describe an intrinsically disordered peptide (CLIP6) that exclusively employs non-endosomal mechanisms to cross cellular membranes, while being remarkably biocompatible and serum-stable. We show that a single anionic glutamate residue is responsible for maintaining the disordered bioactive state of the peptide, defines its mechanism of cellular entry, and is central to its biocompatibility. CLIP6 can deliver membrane-impermeable cargo directly to the cytoplasm of cells, suggesting its broad utility for delivery of drug candidates limited by poor cell permeability and endosomal degradation.
Disorder imparts order: CLIP6, an intrinsically disordered peptide, mediates cellular entry through non-endosomal physical translocation across the membrane. This activity, defined by its unstructured state, facilitates the delivery of membrane-impermeable cargo to the interior of cells.
01 Feb 23:59
by Dillon Schiff, Hagit Aviv, Efraim Rosenbaum and Yaakov R. Tischler

Analytical Chemistry
DOI: 10.1021/acs.analchem.5b03754
01 Feb 11:56
Nucleic acid aptamers and protein scaffolds could change the way researchers study biological processes and treat disease.
01 Feb 01:13
Publication date: April 2016
Source:Current Opinion in Microbiology, Volume 30
Author(s): Olga E Petrova, Karin Sauer
Biofilm bacteria have developed escape strategies to avoid stresses associated with biofilm growth, respond to changing environmental conditions, and disseminate to new locations. An ever-expanding body of research suggests that cellular release from biofilms is distinct from a simple reversal of attachment and reversion to a planktonic mode of growth, with biofilm dispersion involving sensing of specific cues, regulatory signal transduction, and consequent physiological alterations. However, dispersion is only one of many ways to escape the biofilm mode of growth. The present review is aimed at distinguishing this active and regulated process of dispersion from the passive processes of desorption and detachment by highlighting the regulatory processes and distinct phenotypes specific to dispersed cells.
Graphical abstract
01 Feb 01:12
Researchers from UAB describe for the first time, in a work published in PLOS ONE, a model of the behaviour of a bacterial colony that shows how it protects itself against toxic substances like antibiotics during the colonisation process.
29 Jan 12:24
One bacterial pathogen is responsible for a range of diseases, from pharyngitis and impetigo to more severe diagnoses such as toxic shock syndrome and necrotizing fasciitis (flesh eating disease), a serious bacterial skin infection that spreads quickly and kills the body's soft tissue. The pathogen, known as Group A Streptococcus, remains a global health burden with an estimated 700 million cases reported annually, and more than half a million deaths due to severe infections.