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Design, Synthesis, and Evaluation of a Low-Molecular-Weight 11C-Labeled Tetrazine for Pretargeted PET Imaging Applying Bioorthogonal in Vivo Click Chemistry
Triggered Drug Release from an Antibody–Drug Conjugate Using Fast “Click-to-Release” Chemistry in Mice
Resistance to antibiotics and to immune system are interconnected in bacteria
Progress and prospects for small-molecule probes of bacterial imaging

Nature Chemical Biology 12, 472 (2016). doi:10.1038/nchembio.2109
Authors: Ozden Kocaoglu & Erin E Carlson
Supramolecular Antibiotic Switches: A Potential Strategy for Combating Drug Resistance
Abstract
Bacterial infectious disease is a serious public health concern throughout the world. Pathogen drug resistance, arising from both rational use and abuse/misuse of germicides, complicates the situation. Aside from developing novel antibiotics and antimicrobial agents, molecular approaches have become another significant method to overcome the problem of pathogen drug resistance. Established supramolecular systems, the antibiotic properties of which can be switched “on” and “off” through host–guest interactions, show great potential in combating issues regarding antibiotic resistance in the long term, as indicated by several recent studies. In this Concept, recently developed strategies for antibacterial regulation are summarized and further directions for research into antibiotic switches are proposed.
99 problems but a switch ain't one: Bacterial infectious disease is a serious public health concern throughout the world. Supramolecular antibiotic systems that can be switched “on” and “off” through host–guest interactions show great potential in combating issues regarding antibiotic resistance in the long term. In this Concept, recently developed strategies for antibacterial regulation are summarized and further research directions are proposed.
Host-mediated sugar oxidation promotes post-antibiotic pathogen expansion
Nature advance online publication 15 June 2016. doi:10.1038/nature18597
Authors: Franziska Faber, Lisa Tran, Mariana X. Byndloss, Christopher A. Lopez, Eric M. Velazquez, Tobias Kerrinnes, Sean-Paul Nuccio, Tamding Wangdi, Oliver Fiehn, Renée M. Tsolis & Andreas J. Bäumler
Changes in the gut microbiota may underpin many human diseases, but the mechanisms that are responsible for altering microbial communities remain poorly understood. Antibiotic usage elevates the risk of contracting gastroenteritis caused by Salmonella enterica serovars, increases the duration for which patients shed the pathogen in their faeces, and may on occasion produce a bacteriologic and symptomatic relapse. These antibiotic-induced changes in the gut microbiota can be studied in mice, in which the disruption of a balanced microbial community by treatment with the antibiotic streptomycin leads to an expansion of S. enterica serovars in the large bowel. However, the mechanisms by which streptomycin treatment drives an expansion of S. enterica serovars are not fully resolved. Here we show that host-mediated oxidation of galactose and glucose promotes post-antibiotic expansion of S. enterica serovar Typhimurium (S. Typhimurium). By elevating expression of the gene encoding inducible nitric oxide synthase (iNOS) in the caecal mucosa, streptomycin treatment increased post-antibiotic availability of the oxidation products galactarate and glucarate in the murine caecum. S. Typhimurium used galactarate and glucarate within the gut lumen of streptomycin pre-treated mice, and genetic ablation of the respective catabolic pathways reduced S. Typhimurium competitiveness. Our results identify host-mediated oxidation of carbohydrates in the gut as a mechanism for post-antibiotic pathogen expansion.
Glycoengineered OMVs elicit protective antibodies [Applied Biological Sciences]
Helical Foldamers Incorporating Photoswitchable Residues for Light-Mediated Modulation of Conformational Preference
Classic Spotlight: Cellular Sites of Peptidoglycan Synthesis Revealed [Editorials]
A luciferin analogue generating near-infrared bioluminescence achieves highly sensitive deep-tissue imaging
Article
D -luciferin is the standard bioluminescent substrate for in vitro and in vivo imaging. Here the authors introduce AkaLumine-HCl, a soluble luciferin analogue with a near-infrared emission maximum, which allows deep tissue imaging at lower concentrations than D -luciferin.
Nature Communications doi: 10.1038/ncomms11856
Authors: Takahiro Kuchimaru, Satoshi Iwano, Masahiro Kiyama, Shun Mitsumata, Tetsuya Kadonosono, Haruki Niwa, Shojiro Maki, Shinae Kizaka-Kondoh
Imaging and therapeutic applications of zinc(II)-dipicolylamine molecular probes for anionic biomembranes
DOI: 10.1039/C6CC03669D, Feature Article
Synthetic ZnDPA receptors are used for molecular imaging of disease and targeted therapeutics.
The content of this RSS Feed (c) The Royal Society of Chemistry
Engineering Gram Selectivity of Mixed-Charge Gold Nanoparticles by Tuning the Balance of Surface Charges
Abstract
Nanoparticles covered with ligand shells comprising both positively and negatively charged ligands exhibit Gram-selective antibacterial action controlled by a single experimental parameter, namely the proportion of [+] and [−] ligands tethered onto these particles. Gram selectivity is attributed to the interplay between polyvalent electrostatic and non-covalent interactions that work in unison to disrupt the bacterial cell wall. The [+/−] nanoparticles are effective in low doses, are non-toxic to mammalian cells, and are tolerated well in mice. These results constitute the first example of rational engineering of Gram selectivity at the (macro)molecular level.
Gram-specific antimicrobial activity: Nanoparticles covered with mixtures of negatively and positively charged ligands in optimal proportions exhibit antibiotic properties that can be engineered specific to either Gram-positive or Gram-negative bacteria. Arrows in the experimental images point to the places at which the particles rupture the bacterial cell wall.
A click chemistry-based microRNA maturation assay optimized for high-throughput screening
DOI: 10.1039/C6CC02894B, Communication
A catalytic enzyme-linked click chemistry assay (cat-ELCCA) for Dicer-catalyzed pre-microRNA maturation was optimized to employ inverse-electron demand Diels-Alder (IEDDA) chemistry affording high-throughput screening capability.
The content of this RSS Feed (c) The Royal Society of Chemistry
Carolyn Bertozzi: Glycan Chemist
Superbug resistant to last resort antibiotic identified in the US
Gut microbiota, metabolites and host immunity
Nature Reviews Immunology 16, 341 (2016). doi:10.1038/nri.2016.42
Authors: Michelle G. Rooks & Wendy S. Garrett
The microbiota — the collection of microorganisms that live within and on all mammals — provides crucial signals for the development and function of the immune system. Increased availability of technologies that profile microbial communities is facilitating the entry of many immunologists into the evolving
Promiscuity in the Enzymatic Catalysis of Phosphate and Sulfate Transfer
Insight into bacterial cell division could lead to advancements in the fight against harmful bacteria
A Small-Molecule Screening Platform for the Discovery of Inhibitors of Undecaprenyl Diphosphate Synthase

Treatment of Gram-negative bacterial infections by potentiation of antibiotics
Source:Current Opinion in Microbiology, Volume 33
Author(s): Thomas P Zabawa, Michael J Pucci, Thomas R Parr, Troy Lister
Infections caused by antibiotic-resistant pathogens, particularly Gram-negative bacteria, represent significant treatment challenges for physicians resulting in high rates of morbidity and mortality. The outer membrane of Gram-negative bacteria acts as a permeability barrier to many compounds that would otherwise be effective antibacterial agents, including those effective against Gram-positive pathogens. Potentiator molecules disrupt this barrier allowing entry of otherwise impermeant molecules, thus providing a strategy to render multi-drug resistant pathogens susceptible to a broader range of antibiotics. Potentiator molecules are cationic and the mechanism of disruption involves interaction with the negatively charged outer membrane. This physical attribute, along with an often high degree of lipophilicity typically endears these molecules with unacceptable toxicity. Presented herein are examples of advanced potentiator molecules being evaluated for use in combination therapy for the treatment of resistant Gram-negative infections.
Graphical abstract

New Red-Emitting Tetrazine-Phenoxazine Fluorogenic Labels for Live-Cell Intracellular Bioorthogonal Labeling Schemes
Abstract
The synthesis of a set of tetrazine-bearing fluorogenic dyes suitable for intracellular labeling of proteins in live cells is presented. The red excitability and emission properties ensure minimal autofluorescence, while through-bond energy-transfer-based fluorogenicity reduces nonspecific background fluorescence of unreacted dyes. The tetrazine motif efficiently quenches fluorescence of the phenoxazine core, which can be selectively turned on chemically upon bioorthogonal inverse-electron-demand Diels–Alder reaction with proteins modified genetically with strained trans-cyclooctenes.
Put a tag on it: The synthesis and bioorthogonal labeling potential of a set of tetrazine-based fluorogenic dyes suitable for intracellular labeling of proteins in live cells is presented (see figure). The red excitability and emission properties ensure minimal autofluorescence, while the through-bond energy-transfer-based fluorogenicity reduces nonspecific background fluorescence of unreacted dyes.
White House announces microbiome initiative
18F-Labeling of Mannan for Inflammation Research with Positron Emission Tomography
Multifaceted molecule casts a universal glow on cell surfaces
Total Synthesis of Teixobactin
Click-EM for imaging metabolically tagged nonprotein biomolecules

Nature Chemical Biology 12, 459 (2016). doi:10.1038/nchembio.2076
Authors: John T Ngo, Stephen R Adams, Thomas J Deerinck, Daniela Boassa, Frances Rodriguez-Rivera, Sakina F Palida, Carolyn R Bertozzi, Mark H Ellisman & Roger Y Tsien
An “Unlikely” Pair: The Antimicrobial Synergy of Polymyxin B in Combination with the Cystic Fibrosis Transmembrane Conductance Regulator Drugs KALYDECO and ORKAMBI

Review stapling peptides using cysteine crosslinking
Abstract
Stapled peptides are an emerging class of cyclic peptide molecules with enhanced biophysical properties such as conformational and proteolytic stability, cellular uptake and elevated binding affinity and specificity for their biological targets. Among the limited number of chemistries available for their synthesis, the cysteine-based stapling strategy has received considerable development in the last few years driven by facile access from cysteine-functionalized peptide precursors. Here we present some recent advances in peptide and protein stapling where the side-chains of cysteine residues are covalently connected with a range of different crosslinkers affording bisthioether macrocyclic peptides of varying topology and biophysical properties. © 2016 Wiley Periodicals, Inc. Biopolymers (Pept Sci) 106: 843–852, 2016.




