05 Oct 13:20
by F L Byrne
Cancer Res. 2023 Jan 18;83(2):167-169. doi: 10.1158/0008-5472.CAN-22-3350.
ABSTRACT
While the goal of most anticancer treatments is to kill cancer cells, some therapies halt cancer progression by inducing cancer cell differentiation. For example, retinoic acid induces neuroblastoma cell differentiation in vitro and is used as maintenance therapy for children with high-risk neuroblastoma. A new study by Jiang and colleagues has revealed the mitochondrial uncoupler niclosamide ethanolamine (NEN) induces neuroblastoma cell differentiation in vitro and slows neuroblastoma tumor growth in vivo. Mitochondrial uncoupler molecules alter cell metabolism by forcing cells to "burn" more nutrients, resulting in a switch from anabolic to catabolic metabolism. NEN-induced neuroblastoma cell differentiation was associated with disruption of Warburg metabolism, epigenetic remodeling, and downregulation of key oncogenic drivers of neuroblastoma development, including MYCN. NEN is currently used as an antiparasitic worm treatment and is safe to use in children but has poor pharmacokinetic properties. However, derivatives of NEN and structurally distinct uncouplers that have improved pharmacokinetic properties are in development. Results of this study ignite the idea that mitochondrial uncouplers could be used as differentiating agents and expand the pharmacotherapy toolkit to treat cancer, including neuroblastoma. See related article by Jiang et al., p. 181.
PMID:36651076 | DOI:10.1158/0008-5472.CAN-22-3350
30 Jan 22:36
by Paddy S Gibson
Curr Opin Microbiol. 2023 Apr;72:102261. doi: 10.1016/j.mib.2022.102261. Epub 2023 Jan 11.
ABSTRACT
Streptococcus pneumoniae is the most common cause of community-acquired pneumonia, and one of the main pathogens responsible for otitis media infections in children. Amoxicillin (AMX) is a broad-spectrum β-lactam antibiotic, used frequently for the treatment of bacterial respiratory tract infections. Here, we discuss the pneumococcal response to AMX, including the mode of action of AMX, the effects on autolysin regulation, and the evolution of resistance through natural transformation. We discuss current knowledge gaps in the synthesis and translocation of peptidoglycan and teichoic acids, major constituents of the pneumococcal cell wall and critical to AMX activity. Furthermore, an outlook of AMX resistance research is presented, including the development of natural competence inhibitors to block evolution via horizontal gene transfer, and the use of high-throughput essentiality screens for the discovery of novel cotherapeutics.
PMID:36638546 | DOI:10.1016/j.mib.2022.102261
30 Jan 22:35
by Chao-Chin Liu
Front Microbiol. 2023 Jan 5;13:1068251. doi: 10.3389/fmicb.2022.1068251. eCollection 2022.
ABSTRACT
Staphylococcus aureus, which lacks pili and flagella, is nonmotile. However, it hitchhikes motile bacteria, such as Pseudomonas aeruginosa, to migrate in the environment. This study demonstrated that the hitchhiking motility of S. aureus SA113 was reduced after the tagO, which encodes an enzyme for wall teichoic acids (WTA) synthesis, was deleted. The hitchhiking motility was restored after the mutation was complemented by transforming a plasmid expressing TagO into the mutant. We also showed that adding purified lipopolysaccharide (LPS) to a culture that contains S. aureus SA113 and P. aeruginosa PAO1, reduced the movement of S. aureus, showing that WTA and LPS are involved in the hitchhiking motility of S. aureus. This study also found that P. aeruginosa promoted the movement of S. aureus in the digestive tract of Caenorhabditis elegans and in mice. In conclusion, this study reveals how S. aureus hitchhikes P. aeruginosa for translocation in an ecosystem. The results from this study improve our understanding on how a nonmotile pathogen moves in the environment and spreads in animals.
PMID:36687638 | PMC:PMC9849799 | DOI:10.3389/fmicb.2022.1068251
27 Jan 19:00
by Laura J. Pallett
Nature, Published online: 25 January 2023; doi:10.1038/s41586-022-05645-6
Bacterial products in the gut–liver axis and tissue stromal factors can tune liver immunity by driving myeloid instruction of CD8+ T cells with immunomodulatory ability.
27 Jan 18:58
by Masakazu Kobayashi, Kei Fujita, Kenichi Matsuda, and Toshiyuki Wakimoto

Journal of the American Chemical Society
DOI: 10.1021/jacs.2c11082
27 Jan 18:51
by Hui Wu, Linyan Zheng, Neng Ling, Liyan Zheng, Yulin Du, Qiang Zhang, Yue Liu, Weihong Tan, and Liping Qiu

Journal of the American Chemical Society
DOI: 10.1021/jacs.2c10903
27 Jan 14:47
The pathogen Pseudomonas aeruginosa is the cause of a large number of serious infections and places a particular burden on immunocompromised patients. The increasing spread of antimicrobial resistance makes it even more difficult to combat the dreaded hospital pathogen.
27 Jan 14:46
A potent plant toxin with a unique way of killing harmful bacteria has emerged as one of the strongest new antibiotic candidates in decades.
26 Jan 20:04
by Omozojie P Aigbogun
Mol Pharm. 2023 Feb 6;20(2):853-874. doi: 10.1021/acs.molpharmaceut.2c00821. Epub 2023 Jan 25.
ABSTRACT
Small-molecule drugs have been employed for years as therapeutics in the pharmaceutical industry. However, small-molecule drugs typically have short in vivo half-lives which is one of the largest impediments to the success of many potentially valuable pharmacologically active small molecules. The undesirable pharmacokinetics and pharmacology associated with some small molecules have led to the development of a new class of bioconjugates known as chemically programmed antibodies (cPAbs). cPAbs are bioconjugates in which antibodies are used to augment small molecules with effector functions and prolonged pharmacokinetic profiles, where the pharmacophore of the small molecule is harnessed for target binding and therefore biological targeting. Many different small molecules can be conjugated to large proteins such as full monoclonal antibodies (IgG), fragment crystallizable regions (Fc), or fragment antigen binding regions (Fab). In order to successfully and site-specifically conjugate small molecules to any class of antibodies (IgG, Fc, or Fab), the molecules must be derivatized with a functional group for ease of conjugation without altering the pharmacology of the small molecules. In this Review, we summarize the different synthetic or biological methods that have been employed to produce cPAbs. These unique chemistries have potential to be applied to other fields of antibody modification such as antibody drug conjugates, radioimmunoconjugates, and fluorophore-tagged antibodies.
PMID:36696533 | DOI:10.1021/acs.molpharmaceut.2c00821
26 Jan 20:03
by Kun Niu, Qiang Fu, Zi-Long Mei, Li-Rong Ge, An-Qi Guan, Zhi-Qiang Liu, and Yu-Guo Zheng

ACS Synthetic Biology
DOI: 10.1021/acssynbio.2c00481
23 Jan 14:33
by Lingmin Zhang,
Yinshan Lin,
Songpei Li,
Xiaoling Guan,
Xingyu Jiang
A type of internally and externally engineered exosomes (I3E) was constructed with the CRISPR interference system internally engineered, and the tumor-associated macrophages (TAMs)-specific peptide externally engineered. I3E enabled to in situ reprogram the M2 TAMs to M1 by inactivating PI3Kγ completely, which awakened the “hot” tumor-immunity and inhibited tumor growth significantly.
Abstract
The reprogramming of tumor-associated macrophages (TAMs) has emerged as an efficient strategy for immunotherapy. However, most of the approaches did not allow the in situ reprogramming of TAM because their low efficiency, non-specificity, or potential side effects. Herein, we produced exosomes with the clustered regularly interspaced short palindromic repeats interference (CRISPRi) internally engineered and the TAM specific peptide externally engineered onto the exosome membrane. The
i
nternally and
e
xternally
e
ngineered
e
xosomes (IEEE, also named as I3E) allowed the selective homing to tumor tissue and targeted to M2-like TAMs, which nearly repressed the expression of PI-3 kinase gamma (PI3Kγ) completely, and induced the TAMs polarizing to M1 both in vitro and in vivo. The polarized M1 macrophages awakened the “hot” tumor-immunity, causing the increase of T lymphocyte infiltration and the decrease of myeloid-derived suppressor cells, and inhibiting the tumor growth significantly. I3E reprogramed TAMs in situ precisely and efficiently.
23 Jan 14:32
by Shaowen Xie,
Feiyan Zhan,
Jingjie Zhu,
Yuan Sun,
Huajian Zhu,
Jie Liu,
Jian Chen,
Zheying Zhu,
Dong-Hua Yang,
Zhe-Sheng Chen,
Hong Yao,
Jinyi Xu,
Shengtao Xu
A novel norbornene-based hydrophobic tag was developed that expands the clinical potential of targeted protein degradation technologies. The degrader Hyt-9, which was obtained by connecting an ALK ligand with norbornene, exhibited potent antiproliferative and degradative activities in vitro and in vivo. Furthermore, norbornene could be used to degrade EZH2 when tagged with the EZH2 inhibitor tazemetostat in degrader Hyt-13.
Abstract
Hydrophobic tagging (HyT) is a potential therapeutic strategy for targeted protein degradation (TPD). Norbornene was discovered as an unprecedented hydrophobic tag in this study and was used to degrade the anaplastic lymphoma kinase (ALK) fusion protein by linking it to ALK inhibitors. The most promising degrader, Hyt-9, potently reduced ALK levels through Hsp70 and the ubiquitin−proteasome system (UPS) in vitro without compensatory upregulation of ALK. Furthermore, Hyt-9 exhibited a significant tumor-inhibiting effect in vivo with moderate oral bioavailability. More importantly, norbornene can also be used to degrade the intractable enhancer of zeste homolog 2 (EZH2) when tagged with the EZH2 inhibitor tazemetostat. Thus, the discovery of novel hydrophobic norbornene tags shows promise for the future development of TPD technology.
13 Jan 22:02
by Carsten Peukert
J Med Chem. 2023 Jan 12;66(1):553-576. doi: 10.1021/acs.jmedchem.2c01489. Epub 2022 Dec 22.
ABSTRACT
Rising infection rates with multidrug-resistant pathogens calls for antibiotics with novel modes of action. Herein, we identify the inner membrane protein TonB, a motor of active uptake in Gram-negative bacteria, as a novel target in antimicrobial therapy. The interaction of the TonB box of outer membrane transporters with TonB is crucial for the internalization of essential metabolites. We designed TonB box peptides and coupled them with synthetic siderophores in order to facilitate their uptake into bacteria in up to 32 synthetic steps. Three conjugates repressed the growth of Pseudomonas aeruginosa cells unable to produce their own siderophores, with minimal inhibitory concentrations between 0.1 and 0.5 μM. The transporters mediating uptake of these compounds were identified as PfeA and PirA. The study illustrates a variant of cellular suicide where a transporter imports its own inhibitor and demonstrates that artificial siderophores can import cargo with molecular weights up to 4 kDa.
PMID:36548006 | PMC:PMC9841981 | DOI:10.1021/acs.jmedchem.2c01489
13 Jan 21:49
by Fu Namai
AMB Express. 2023 Jan 12;13(1):4. doi: 10.1186/s13568-023-01509-y.
ABSTRACT
Here, we developed a genetically modified lactic acid bacteria (gmLAB) that produces green fluorescent protein (GFP)-conjugating, anti-programmed death-ligand 1 (PD-L1) single-chain variable fragments (scFv) for use as an anti-cancer device that targets immune checkpoint molecules. Since PD-L1 plays a key role as an immune checkpoint molecule in the tumor microenvironment, inhibition and detection of PD-L1 are important in cancer research. The anti-PD-L1 scFv was designed based on atezolizumab, a humanized IgG1 monoclonal antibody, and integrated into a lactococcal GFP gene expression vector. Gene expression from the constructed gmLAB was confirmed by western blotting and GFP fluorescence. The ability of GFP-conjugating anti-PD-L1 scFv against the target antigen, PD-L1 protein, was shown using an enzyme-linked immunosorbent assay. Finally, the ability to recognize PD-L1-expressing tumor-cell lines was confirmed using flow cytometry and fluorescence microscopy. Our results suggest that the gmLAB could be applied to in vivo imaging in cancer as an affordable diagnostic/treatment tool.
PMID:36635518 | PMC:PMC9837357 | DOI:10.1186/s13568-023-01509-y
13 Jan 16:29
by Michael C. Gilmore
Nature Communications, Published online: 24 December 2022; doi:10.1038/s41467-022-35607-5
Some bacteria use the muropeptide transporter AmpG for uptake and recycling of cell wall fragments that are released during cell growth and division. Here, Gilmore & Cava show that the plant pathogen Agrobacterium tumefaciens, which lacks an AmpG homologue, uses a different type of transporter for the same function, which is essential for normal growth in this organism.
13 Jan 16:27
by Rémi Le Guern
Nature Communications, Published online: 05 January 2023; doi:10.1038/s41467-022-35767-4
Gut microbiome dysbiosis has been shown to alter the immune response to lung infection. Authors utilise a murine model to investigate if gut colonisation with carbapenemase-producing Enterobacterales altered the outcomes of Pseudomonas aeruginosa lung infection.
13 Jan 16:26
by Ji Min Lee
Nature Communications, Published online: 13 January 2023; doi:10.1038/s41467-023-35795-8
Here the authors summarize current knowledge of the regulation of protein stability by various post-translational modifications (PTMs) including methylation and phosphorylation. PTM-regulated degrons act as signals for protein degradation or stabilization.
13 Jan 16:15
by Jian Li
Nature Chemistry, Published online: 06 January 2023; doi:10.1038/s41557-022-01114-9
Ribosomes cannot synthesize peptides using hydroxy acids to replace canonical amino acids as no codons encode hydroxy acid building blocks. Now, this challenge has been addressed by rewriting the genetic code, enabling the direct cellular biosynthesis of non-natural depsipeptides containing non-canonical amino acids.
13 Jan 13:56
by Salome Püntener and Pablo Rivera-Fuentes

Journal of the American Chemical Society
DOI: 10.1021/jacs.2c12561
13 Jan 13:53
by Shuaimin Lu, Shihui Fan, Shuling Xiao, Jinjing Li, Shilong Zhang, Yapei Wu, Chuilian Kong, Jie Zhuang, Hongtan Liu, Yibing Zhao, and Chuanliu Wu

Journal of the American Chemical Society
DOI: 10.1021/jacs.2c12462
13 Jan 13:43
by Maria Fernanda de Souza Costa,
Filipe Pereira‐Dutra,
Nathalie Deboosere,
Samuel Jouny,
Ok‐Ryul Song,
Guilherme Iack,
Andreia Lamoglia Souza,
Eric Henrique Roma,
Vincent Delorme,
Patricia T. Bozza,
Priscille Brodin
Mycobacterium tuberculosis replicate inside BMDCs and induce LD accumulation, which is related to RD1 locus, strain virulence and bacterial viability.
Abstract
Tuberculosis remains a global health threat with high morbidity. Dendritic cells (DCs) participate in the acute and chronic inflammatory responses to Mycobacterium tuberculosis (Mtb) by directing the adaptive immune response and are present in lung granulomas. In macrophages, the interaction of lipid droplets (LDs) with mycobacteria-containing phagosomes is central to host-pathogen interactions. However, the data available for DCs are still a matter of debate. Here, we reported that bone marrow-derived DCs (BMDCs) were susceptible to Mtb infection and replication at similar rate to macrophages. Unlike macrophages, the analysis of gene expression showed that Mtb infection induced a delayed increase in lipid droplet-related genes and proinflammatory response. Hence, LD accumulation has been observed by high-content imaging in late periods. Infection of BMDCs with killed H37Rv demonstrated that LD accumulation depends on Mtb viability. Moreover, infection with the attenuated strains H37Ra and Mycobacterium bovis-BCG induced only an early transient increase in LDs, whereas virulent Mtb also induced delayed LD accumulation. In addition, infection with the BCG strain with the reintroduced virulence RD1 locus induced higher LD accumulation and bacterial replication when compared to parental BCG. Collectively, our data suggest that delayed LD accumulation in DCs is dependent on mycobacterial viability and virulence.
11 Jan 14:29
by Micha Fridman,
Kaori Sakurai
The rising percentage of fungal pathogens resistant to antifungal drugs and fungicides emphasizes the threat that they pose to animal and human health and global food security. This Minireview outlines the pivotal role of chemical biology in uncovering biological activities, detecting resistance, and in characterizing the interactions between antifungal agents and their targets.
Abstract
The growing number of fungal infections caused by pathogens resistant to one or more classes of antifungal drugs emphasizes the threat that these microorganisms pose to animal and human health and global food security. Open questions remain regarding the mechanisms of action of the limited repertoire of antifungal agents, making it challenging to rationally develop more efficacious therapeutics. In recent years, the use of chemical biology approaches has resolved some of these questions and has provided new promising concepts to guide the design of antifungal agents. By focusing on examples from studies carried out in recent years, this minireview describes the key roles that probes based on antifungal agents and their derivatives have played in uncovering details about their activities, in detecting resistance, and in characterizing the interactions between these agents and their targets.
10 Jan 22:21
by Pei Jing, Yuling Luo, Yun Chen, Jiangbing Tan, Chunyan Liao, and Shiyong Zhang
![TOC Graphic]()
Bioconjugate Chemistry
DOI: 10.1021/acs.bioconjchem.2c00548
10 Jan 20:08
by Meghan K. O’Leary, Asraa Ahmed, and Christopher A. Alabi
![TOC Graphic]()
ACS Infectious Diseases
DOI: 10.1021/acsinfecdis.2c00492
10 Jan 18:41
by Young Hun Chung, Britney A. Volckaert, and Nicole F. Steinmetz

Bioconjugate Chemistry
DOI: 10.1021/acs.bioconjchem.2c00601
10 Jan 18:41
by De-Zhong Xu, Xue-Yi Sun, Ya-Xuan Liang, Hai-Wei Huang, Rui Liu, Zhong-Lin Lu, and Lan He

Bioconjugate Chemistry
DOI: 10.1021/acs.bioconjchem.2c00545
10 Jan 15:47
by Fatemeh Yaghoobizadeh
Protein Expr Purif. 2023 Mar;203:106210. doi: 10.1016/j.pep.2022.106210. Epub 2022 Dec 4.
ABSTRACT
Many efforts have been made around the world to combat SARS-CoV-2. Among these are recombinant antibodies considered to be suitable as an alternative for some diagnostics/therapeutics. Based on their importance, this study aimed to investigate the expression, purification, and efficiency of a new potent recombinant scFv in the E. coli BL21 (DE3) system. The expression studies were performed after confirming the scFv cloning into the pET28a vector using specific PCRs. After comprehensive expression studies, a suitable strategy was adopted to extract and purify periplasmic proteins using Ni2+-NTA resin. Besides the purified scFv, the crude bacterial lysate was also used to develop a sandwich ELISA (S-ELISA) for the detection of SARS-CoV-2. The use of PCR, E. coli expression system, western blotting (WB), and S-ELISA confirmed the functionality of this potent scFv. Moreover, the crude bacterial lysate also showed good potential for detecting SARS-CoV-2. This could be decreasing the costs and ease its utilization for large-scale applications. The production of high-quality recombinant proteins is essential for humankind. Moreover, with attention to the more aggressive nature of SARS-CoV-2 than other coronaviruses, the development of an effective detection method is urgent. Based on our knowledge, this study is one of the limited investigations in two fields: (1) The production of anti-SARS-CoV-2 scFv using E. coli [as a cheap heterologous host] in relatively high amounts and with good stability, and (2) Designing a sensitive S-ELISA for its detection. It may also be utilized as potent therapeutics after further investigations.
PMID:36473692 | PMC:PMC9719605 | DOI:10.1016/j.pep.2022.106210
09 Jan 22:42
by Benjamin P M Lake
Angew Chem Int Ed Engl. 2023 Feb 20;62(9):e202214659. doi: 10.1002/anie.202214659. Epub 2023 Jan 23.
ABSTRACT
Chemical immunotherapeutic strategies including Antibody Recruiting Molecules (ARMs - bivalent small molecules containing an antibody-binding domain (ABD) and a target-binding domain (TBD)) direct immune-mediated clearance of diseased cells. Anti-cancer ARM function relies on high tumor antigen valency, limiting function against lower antigen expressing tumors. To address this limitation, we report a tunable multivalent immune recruitment (MIR) platform to amplify/stabilize antibody recruitment to cells with lower antigen valencies. An initial set of polymeric ARMs (pARMs) were synthesized and screened to evaluate ABD/TBD copy number, ratio, and steric occlusion on specific immune induction. Most pARMs demonstrated simultaneous high avidity binding to anti-dinitrophenyl antibodies and prostate-specific membrane antigens on prostate cancer. Optimized pARMs mediated enhanced anti-cancer immune function against lower antigen expressing target cells compared to an analogous ARM.
PMID:36577087 | DOI:10.1002/anie.202214659
09 Jan 19:12
by Patricia Arias-Orozco, Yunhai Yi, Fleur Ruijne, Rubén Cebrián, and Oscar P. Kuipers

ACS Synthetic Biology
DOI: 10.1021/acssynbio.2c00455
09 Jan 18:55
by Dan Wang, Jing Zhang, Zhiyong huang, Yuhang Yang, Ting Fu, Yu Yang, Yifan Lyu, Jianhui Jiang, Liping Qiu, Zehui Cao, Xiaobing Zhang, Qimin You, Yuankui Lin, Zilong Zhao, and Weihong Tan

ACS Central Science
DOI: 10.1021/acscentsci.2c01263