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31 Jul 19:22

Synthesis of structure-defined beta-1,4-GlcNAc-modified wall teichoic acids as potential vaccine against methicillin-resistant Staphylococcus aureus

by Peng Shen

Eur J Med Chem. 2023 Oct 5;258:115553. doi: 10.1016/j.ejmech.2023.115553. Epub 2023 Jun 15.

ABSTRACT

Methicillin-resistant Staphylococcus aureus (MRSA) is a high priority pathogen due to its life-threating infections to human health. Development of prophylactic or therapeutic anti-MRSA vaccine is a potential approach to treat S. aureus infections and overcome the resistance crisis. β-1,4-GlcNAc glycosylated wall teichoic acids (WTAs) derived from S. aureus are a new type of antigen that is closely associated with β-lactam resistance. In this study, structure-defined β-1,4-GlcNAc-modified WTAs varied in chain length and numbers of GlcNAc modification were synthesized by an ionic liquid-supported oligosaccharide synthesis (ILSOS) strategy in high efficiency and chromatography-free approach. Then the obtained WTAs were conjugated with tetanus toxin (TT) as vaccine candidates and were further evaluated in a mouse model to determine the structure-immunogenicity relationship. In vivo immunological studies revealed that the WTAs-TT conjugates provoked robust T cell-dependent responses and elicited high levels of specific anti-WTAs IgG antibodies production associated with the WTAs structure including chain length as well as the β-1,4-GlcNAc modification pattern. Heptamer WTAs conjugate T6, carrying three copy of β-1,4-GlcNAc modified RboP, was identified to elicit the highest titers of specific antibody production. The T6 antisera exhibited the highest recognition and binding affinity and the most potent OP-killing activities to MSSA and MRSA cells. This study demonstrated that β-1,4-GlcNAc glycosylated WTAs are promising antigens for further development against MRSA.

PMID:37336068 | DOI:10.1016/j.ejmech.2023.115553

26 Jun 14:23

[ASAP] Click Chemistry Selectively Activates an Auristatin Protodrug with either Intratumoral or Systemic Tumor-Targeting Agents

by Jesse M. McFarland, Maša Alečković, George Coricor, Sangeetha Srinivasan, Matthew Tso, John Lee, Tri-Hung Nguyen, and José M. Mejía Oneto

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ACS Central Science
DOI: 10.1021/acscentsci.3c00365
16 Jun 16:20

[ASAP] Oral Hydrogel Microbeads-Mediated In Situ Synthesis of Selenoproteins for Regulating Intestinal Immunity and Microbiota

by Jiang Ouyang, Bo Deng, Binhua Zou, Yongjiang Li, Qingyue Bu, Yuan Tian, Mingkai Chen, Wei Chen, Na Kong, Tianfeng Chen, and Wei Tao

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Journal of the American Chemical Society
DOI: 10.1021/jacs.3c02179
16 Jun 16:14

[ASAP] Serum-Stable Gold(III) Bisphosphine Complex Induces Mild Mitochondrial Uncoupling and In Vivo Antitumor Potency in Triple Negative Breast Cancer

by Adedamola S. Arojojoye, Chibuzor Olelewe, Sailajah Gukathasan, Jong H. Kim, Hemendra Vekaria, Sean Parkin, Patrick G. Sullivan, and Samuel G. Awuah

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.3c00238
16 Jun 16:13

[ASAP] Identification of a pH-Responsive Peptide–Paclitaxel Conjugate as a Novel Drug with Improved Therapeutic Potential

by Syed Faheem Askari Rizvi, Nadir Abbas, Haixia Zhang, and Quan Fang

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Journal of Medicinal Chemistry
DOI: 10.1021/acs.jmedchem.3c00382
16 Jun 16:03

Structures and Mechanisms of a Novel Bacterial Transport System for Fatty Acids

by Liting Zhai, Jonathan Chiu-Chun Chou, Hannah Oo, Laura Dassama
Structures and Mechanisms of a Novel Bacterial Transport System for Fatty Acids

The bacterial tripartite ATP-independent transporters facilitate the uptake of dicarboxylates and similar metabolites. Some have evolved to work with an additional lipoprotein component, TatT, whose role remained elusive. This work demonstrates that TatT displays a preference for lipophilic molecules and represents a novel transport system for lipids.


Abstract

Bacterial acquisition of metabolites is largely facilitated by transporters with unique substrate scopes. The tripartite ATP-independent periplasmic (TRAP) transporters comprise a large family of bacterial proteins that facilitate the uptake of a variety of small molecules. It has been reported that some TRAP systems encode a fourth protein, the T component. The T-component, or TatT, is predicted to be a periplasmic-facing lipoprotein that enables the uptake of metabolites from the outer membrane. However, no substrates were revealed for any TatT and their functional role(s) remained enigmatic. We recently identified a homolog in Methylococcus capsulatus that binds to sterols, and herein, we report two additional homologs that demonstrate a preference for long-chain fatty acids. Our bioinformatics, quantitative analyses of protein-ligand interactions, and high-resolution crystal structures suggest that TatTs might facilitate the trafficking of hydrophobic or lipophilic substrates and represent a new class of bacterial lipid and fatty acid transporters.

16 Jun 15:46

Electron transport chain inhibition increases cellular dependence on purine transport and salvage [NEW RESULTS]

by Wu, Z.
Cancer cells reprogram their metabolism to support cell growth and proliferation in harsh environments. While many studies have documented the importance of mitochondrial oxidative phosphorylation (OXPHOS) in tumor growth, some cancer cells experience conditions of reduced OXPHOS in vivo and induce alternative metabolic pathways to compensate. To assess how human cells respond to mitochondrial dysfunction, we performed metabolomics in fibroblasts and plasma from patients with inborn errors of mitochondrial metabolism, and in cancer cells subjected to inhibition of the electron transport chain (ETC). All these analyses revealed extensive perturbations in purine-related metabolites; in non-small cell lung cancer (NSCLC) cells, ETC blockade led to purine metabolite accumulation arising from a reduced cytosolic NAD+/NADH ratio (NADH reductive stress). Stable isotope tracing demonstrated that ETC deficiency suppressed de novo purine nucleotide synthesis while enhancing purine salvage. Analysis of NSCLC patients infused with [U-13C]glucose revealed that tumors with markers of low oxidative mitochondrial metabolism exhibited high expression of the purine salvage enzyme HPRT1 and abundant levels of the HPRT1 product inosine monophosphate (IMP). ETC blockade also induced production of ribose-5 phosphate (R5P) by the pentose phosphate pathway (PPP) and import of purine nucleobases. Blocking either HPRT1 or nucleoside transporters sensitized cancer cells to ETC inhibition, and overexpressing nucleoside transporters was sufficient to drive growth of NSCLC xenografts. Collectively, this study mechanistically delineates how cells compensate for suppressed purine metabolism in response to ETC blockade, and uncovers a new metabolic vulnerability in tumors experiencing NADH excess.
15 Jun 19:43

[ASAP] Genetic Engineering of Bacteriophage K1F with Human Epidermal Growth Factor to Enhance Killing of Intracellular E. coli K1

by Joshua Williams, Jaimee Kerven, Yin Chen, and Antonia P. Sagona

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ACS Synthetic Biology
DOI: 10.1021/acssynbio.3c00135
14 Jun 20:17

Serum-Stable Gold(III) Bisphosphine Complex Induces Mild Mitochondrial Uncoupling and In Vivo Antitumor Potency in Triple Negative Breast Cancer

by Adedamola S Arojojoye

J Med Chem. 2023 Jun 22;66(12):7868-7879. doi: 10.1021/acs.jmedchem.3c00238. Epub 2023 Jun 6.

ABSTRACT

The preparation of cyclometalated complexes offers a path to stable materials, catalysts, and therapeutic agents. Here, we explore the anticancer potential of novel biphenyl organogold(III) cationic complexes supported by diverse bisphosphine ligands, Au-1-Au-5, toward aggressive glioblastoma and triple negative breast cancer cells (TNBCs). The [C^C] gold(III) complex, Au-3, exhibits significant tumor growth inhibition in a metastatic TNBC mouse model. Remarkably, Au-3 displays promising blood serum stability over a relevant therapeutic window of 24 h and alteration in the presence of excess L-GSH. The mechanism-of-action studies show that Au-3 induces mitochondrial uncoupling, membrane depolarization, and G1 cell cycle arrest and prompts apoptosis. To the best of our knowledge, Au-3 is the first biphenyl gold-phosphine complex to uncouple mitochondria and inhibit TNBC growth in vivo.

PMID:37279147 | DOI:10.1021/acs.jmedchem.3c00238

14 Jun 19:28

[ASAP] Live-Cell Mitochondrial Targeted NIR Fluorescent Covalent Labeling of Specific Proteins Using a Dual Localization Effect

by Pranab Chandra Saha, Rabi Sankar Das, Shreya Das, Nayim Sepay, Tanima Chatterjee, Ayan Mukherjee, Tapas Bera, Samiran Kar, Maitree Bhattacharyya, Arunima Sengupta, and Samit Guha

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Bioconjugate Chemistry
DOI: 10.1021/acs.bioconjchem.3c00185
14 Jun 19:11

Scientists use AI to find promising new antibiotic to fight evasive hospital superbug

Scientists at McMaster University and the Massachusetts Institute of Technology have used artificial intelligence to discover a new antibiotic that could be used to fight a deadly, drug-resistant pathogen that strikes vulnerable hospital patients.
14 Jun 19:11

Chemists develop a new class of antibiotics to fight resistant bacteria

Health professionals are in urgent need of new antibiotics to tackle resistant bacteria. Researchers at the University of Zurich and the company Spexis have now modified the chemical structure of naturally occurring peptides to develop antimicrobial molecules that bind to novel targets in the bacteria's metabolism.
14 Jun 13:05

[ASAP] Immune Targeting of Mycobacteria through Cell Surface Glycan Engineering

by Priscilla Dzigba, Adrian K. Rylski, Isaac J. Angera, Nicholas Banahene, Herbert W. Kavunja, Mallary C. Greenlee-Wacker, and Benjamin M. Swarts

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ACS Chemical Biology
DOI: 10.1021/acschembio.3c00155
02 Jun 15:24

TRIM21 promotes ubiquitination of SARS-CoV-2 nucleocapsid protein to regulate innate immunity

by Shenglan Mao

J Med Virol. 2023 Apr;95(4):e28719. doi: 10.1002/jmv.28719.

ABSTRACT

The innate immune response is the first line of host defense against viral infections, but its role in immunity against SARS-CoV-2 remains unclear. By using immunoprecipitation coupled with mass spectroscopy, we observed that the E3 ubiquitin ligase TRIM21 interacted with the SARS-CoV-2 nucleocapsid (N) protein and ubiquitinated it at Lys375 . Upon determining the topology of the TRIM21-mediated polyubiquitination chain on N protein, we then found that polyubiquitination led to tagging of the N protein for degradation by the host cell proteasome. Furthermore, TRIM21 also ubiquitinated the N proteins of SARS-CoV-2 variants of concern, including Alpha, Beta, Gamma, Delta, and Omicron together with SARS-CoV and MERS-CoV variants. Herein, we propose that ubiquitylation and degradation of the SARS-CoV-2 N protein inhibited SARS-CoV-2 viral particle assembly, by which it probably involved in preventing cytokine storm. Eventually, our study has fully revealed the association between the host innate immune system and SARS-CoV-2 N protein, which may aid in developing novel SARS-CoV-2 treatment strategies.

PMID:37185839 | DOI:10.1002/jmv.28719

02 Jun 12:53

The ever‐increasing necessity of mass spectrometry in dissecting protein post‐translational modifications catalyzed by bacterial effectors

by Jie Jin, Yi Yuan, Wei Xian, Zhiheng Tang, Jiaqi Fu, Xiaoyun Liu
The ever-increasing necessity of mass spectrometry in dissecting protein post-translational modifications catalyzed by bacterial effectors

Some recent work on protein ADP-ribosylation (and related ADP-riboxanation) and classical phosphorylation are highlighted in the mini review as examples to illustrate our current understanding of this fascinating area in host–pathogen interactions. This review will focus on the application of MS-based approaches in the study of host protein modifications catalyzed by bacterial effectors.


Abstract

Protein post-translational modifications (PTMs), such as ADP-ribosylation and phosphorylation, regulate multiple fundamental biological processes in cells. During bacterial infection, effector proteins are delivered into host cells through dedicated bacterial secretion systems and can modulate important cellular pathways by covalently modifying their host targets. These strategies enable intruding bacteria to subvert various host processes, thereby promoting their own survival and proliferation. Despite rapid expansion of our understanding of effector-mediated PTMs in host cells, analytical measurements of these molecular events still pose significant challenges in the study of host–pathogen interactions. Nevertheless, with major technical breakthroughs in the last two decades, mass spectrometry (MS) has evolved to be a valuable tool for detecting protein PTMs and mapping modification sites. Additionally, large-scale PTM profiling, facilitated by different enrichment strategies prior to MS analysis, allows high-throughput screening of host enzymatic substrates of bacterial effectors. In this review, we summarize the advances in the studies of two representative PTMs (i.e., ADP-ribosylation and phosphorylation) catalyzed by bacterial effectors during infection. Importantly, we will discuss the ever-increasing role of MS in understanding these molecular events and how the latest MS-based tools can aid in future studies of this booming area of pathogenic bacteria–host interactions.

02 Jun 12:51

Stacked binding of a PET ligand to Alzheimer's tau paired helical filaments

by Gregory E Merz

Nat Commun. 2023 May 26;14(1):3048. doi: 10.1038/s41467-023-38537-y.

ABSTRACT

Accumulation of filamentous aggregates of tau protein in the brain is a pathological hallmark of Alzheimer's disease (AD) and many other neurodegenerative tauopathies. The filaments adopt disease-specific cross-β amyloid conformations that self-propagate and are implicated in neuronal loss. Development of molecular diagnostics and therapeutics is of critical importance. However, mechanisms of small molecule binding to the amyloid core is poorly understood. We used cryo-electron microscopy to determine a 2.7 Å structure of AD patient-derived tau paired-helical filaments bound to the PET ligand GTP-1. The compound is bound stoichiometrically at a single site along an exposed cleft of each protofilament in a stacked arrangement matching the fibril symmetry. Multiscale modeling reveals pi-pi aromatic interactions that pair favorably with the small molecule-protein contacts, supporting high specificity and affinity for the AD tau conformation. This binding mode offers critical insight into designing compounds to target different amyloid folds found across neurodegenerative diseases.

PMID:37236970 | PMC:PMC10220082 | DOI:10.1038/s41467-023-38537-y

02 Jun 12:39

Structural basis of purine nucleotide inhibition of human uncoupling protein 1

by Scott A Jones

Sci Adv. 2023 Jun 2;9(22):eadh4251. doi: 10.1126/sciadv.adh4251. Epub 2023 May 31.

ABSTRACT

Mitochondrial uncoupling protein 1 (UCP1) gives brown adipose tissue of mammals its specialized ability to burn calories as heat for thermoregulation. When activated by fatty acids, UCP1 catalyzes the leak of protons across the mitochondrial inner membrane, short-circuiting the mitochondrion to generate heat, bypassing ATP synthesis. In contrast, purine nucleotides bind and inhibit UCP1, regulating proton leak by a molecular mechanism that is unclear. We present the cryo-electron microscopy structure of the GTP-inhibited state of UCP1, which is consistent with its nonconducting state. The purine nucleotide cross-links the transmembrane helices of UCP1 with an extensive interaction network. Our results provide a structural basis for understanding the specificity and pH dependency of the regulatory mechanism. UCP1 has retained all of the key functional and structural features required for a mitochondrial carrier-like transport mechanism. The analysis shows that inhibitor binding prevents the conformational changes that UCP1 uses to facilitate proton leak.

PMID:37256948 | DOI:10.1126/sciadv.adh4251

02 Jun 12:37

[ASAP] Identification of Macrocyclic Peptide Families from Combinatorial Libraries Containing Noncanonical Amino Acids Using Cheminformatics and Bioinformatics Inspired Clustering

by Man-Ling Lee, Sherif Farag, Joselyn S. Del Cid, Charlene Bashore, Kenneth K. Hallenbeck, Alberto Gobbi, and Christian N. Cunningham

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ACS Chemical Biology
DOI: 10.1021/acschembio.3c00159
02 Jun 12:37

[ASAP] Rational Design of Chemically Controlled Antibodies and Protein Therapeutics

by Anthony Marchand, Lucia Bonati, Sailan Shui, Leo Scheller, Pablo Gainza, Stéphane Rosset, Sandrine Georgeon, Li Tang, and Bruno E. Correia

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ACS Chemical Biology
DOI: 10.1021/acschembio.3c00012
17 May 14:18

[ASAP] Microbiome–Gut–Brain Axis Modulation: New Approaches in Treatment of Neuropsychological and Gastrointestinal Functional Disorders

by Robert B. Kargbo

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ACS Medicinal Chemistry Letters
DOI: 10.1021/acsmedchemlett.3c00168
24 Mar 18:08

Heat up the antibiotics

by Agustina Taglialegna

Nature Reviews Microbiology, Published online: 22 March 2023; doi:10.1038/s41579-023-00885-3

This study reports that heat treatment can increase the bactericidal activity of aminoglycosides against multi-drug resistant pathogens.
23 Mar 20:38

MYC-driven synthesis of Siglec ligands is a glycoimmune checkpoint

by Benjamin A H Smith

Proc Natl Acad Sci U S A. 2023 Mar 14;120(11):e2215376120. doi: 10.1073/pnas.2215376120. Epub 2023 Mar 10.

ABSTRACT

The Siglecs (sialic acid-binding immunoglobulin-like lectins) are glycoimmune checkpoint receptors that suppress immune cell activation upon engagement of cognate sialoglycan ligands. The cellular drivers underlying Siglec ligand production on cancer cells are poorly understood. We find the MYC oncogene causally regulates Siglec ligand production to enable tumor immune evasion. A combination of glycomics and RNA-sequencing of mouse tumors revealed the MYC oncogene controls expression of the sialyltransferase St6galnac4 and induces a glycan known as disialyl-T. Using in vivo models and primary human leukemias, we find that disialyl-T functions as a "don't eat me" signal by engaging macrophage Siglec-E in mice or the human ortholog Siglec-7, thereby preventing cancer cell clearance. Combined high expression of MYC and ST6GALNAC4 identifies patients with high-risk cancers and reduced tumor myeloid infiltration. MYC therefore regulates glycosylation to enable tumor immune evasion. We conclude that disialyl-T is a glycoimmune checkpoint ligand. Thus, disialyl-T is a candidate for antibody-based checkpoint blockade, and the disialyl-T synthase ST6GALNAC4 is a potential enzyme target for small molecule-mediated immune therapy.

PMID:36897988 | PMC:PMC10089186 | DOI:10.1073/pnas.2215376120

22 Mar 20:36

[ASAP] Development of Oligomeric Mannose-6-phosphonate Conjugates for Targeted Protein Degradation

by Christopher M. Stevens, Yaxian Zhou, Peng Teng, Lauren N. Rault, Yaxian Liao, and Weiping Tang

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ACS Medicinal Chemistry Letters
DOI: 10.1021/acsmedchemlett.2c00479
22 Mar 20:31

[ASAP] Bioorthogonal Chemical Ligation Creates Synthetic Antibodies with Improved Therapeutic Potency

by Ruixiang Wang and Peng Zou

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ACS Central Science
DOI: 10.1021/acscentsci.3c00240
03 Mar 18:51

Tuning the Cellular Uptake and Retention of Rhodamine Dyes by Molecular Engineering for High‐Contrast Imaging of Cancer Cells

by Gangwei Jiang, Xiao-Feng Lou, Shan Zuo, Xixuan Liu, Tian-Bing Ren, Lu Wang, Xiao-Bing Zhang, Lin Yuan
Tuning the Cellular Uptake and Retention of Rhodamine Dyes by Molecular Engineering for High-Contrast Imaging of Cancer Cells

The present work reports a strategy involving the introduction of a polar aminoalkyl group into asymmetric rhodamine, which aids in regulating the cellular uptake, intracellular retention, and brightness of dyes to efficiently discriminate cancer cells from normal cells. The novel NYL2 dye can serve as an effective platform to engineer various activatable fluorescent probes for high-contrast imaging of cancer cells.


Abstract

Probes allowing high-contrast discrimination of cancer cells and effective retention are powerful tools for the early diagnosis and treatment of cancer. However, conventional small-molecule probes often show limited performance in both aspects. Herein, we report an ingenious molecular engineering strategy for tuning the cellular uptake and retention of rhodamine dyes. Introduction of polar aminoethyl leads to the increased brightness and reduced cellular uptake of dyes, and this change can be reversed by amino acetylation. Moreover, these modifications allow cancer cells to take up more dyes than normal cells (16-fold) through active transport. Specifically, we further improve the signal contrast (56-fold) between cancer and normal cells by constructing activatable probes and confirm that the released fluorophore can remain in cancer cells with extended time, enabling long-term and specific tumor imaging.

03 Mar 18:34

[ASAP] Modular Chemical Construction of IgG-like Mono- and Bispecific Synthetic Antibodies (SynAbs)

by Fabien Thoreau, Peter A. Szijj, Michelle K. Greene, Léa N. C. Rochet, Ioanna A. Thanasi, Jaine K. Blayney, Antoine Maruani, James R. Baker, Christopher J. Scott, and Vijay Chudasama

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ACS Central Science
DOI: 10.1021/acscentsci.2c01437
03 Mar 18:33

[ASAP] Discovery of New States of Immunomodulation for Vaccine Adjuvants via High Throughput Screening: Expanding Innate Responses to PRRs

by Jeremiah Y. Kim, Matthew G. Rosenberger, Siquan Chen, Carman KM IP, Azadeh Bahmani, Qing Chen, Jinjing Shen, Yifeng Tang, Andrew Wang, Emma Kenna, Minjun Son, Savaş Tay, Andrew L. Ferguson, and Aaron P. Esser-Kahn

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ACS Central Science
DOI: 10.1021/acscentsci.2c01351
03 Mar 18:11

Macrophage internalization creates a multidrug-tolerant fungal persister reservoir and facilitates the emergence of drug resistance

by Amir Arastehfar

Nature Communications, Published online: 02 March 2023; doi:10.1038/s41467-023-36882-6

Arastehfar et al. show that macrophage-engulfed cells of fungal pathogen Candida glabrata exhibit multidrug tolerance and increased survival in the presence of cidal antifungal drugs, forming a reservoir from which drug-resistant mutants emerge
03 Mar 18:11

Bioorthogonal Probes for Analyzing Non‐Enzymatic Post‐Translational Modifications

by Zhentao Shao, Yingdi ZHU, Juan Li
Bioorthogonal Probes for Analyzing Non-Enzymatic Post-Translational Modifications

This review focuses on the development and application of bioorthogonal probes for the study of non-enzymatic post-translational modifications, which has been long time challenging due to the heterogeneity of adducts and the lack of appropriate tagging tools.


Abstract

Non-enzymatic post-translational modifications (nPTMs) have been proposed as indicators of cellular stresses and diseases. Unfortunately, direct assessment of nPTMs in native environment is extremely challenging due to the heterogeneity of adducts and the lack of tagging tools. Given these challenges, bioorthogonal probes (BPs) have been developed for the analysis of nPTMs. The rationality is that BPs could selectively install azides or alkynes into nPTMs as a biorthogonal handle for the following enrichment or tracking. Herein, we review the state-of-art of BPs used for nPTMs studies, clarify their working principles, and highlight how they advance our understanding of the biological functions of nPTMs.

20 Feb 14:15

Solid Phase Synthesis of Fluorosulfate Containing Macrocycles for Chemoproteomic Workflows [NEW RESULTS]

by Faucher, F. F.
Macrocyclic peptides are attractive for chemoproteomic applications due to their modular synthesis and potential for high target selectivity. We describe a solid phase synthesis method for the efficient generation of libraries of small macrocycles that contain an electrophile and alkyne handle. The modular synthesis produces libraries that can be directly screened using simple SDS-PAGE readouts and then optimal lead molecules applied to proteomic analysis. We generated a library of 480 macrocyclic peptides containing the weakly reactive fluorosulfate (OSF) electrophile. Initial screening of a subset of the library containing each of the various diversity elements identified initial molecules of interest. The corresponding positional and confirmational isomers were then screened to select molecules that showed specific protein labeling patterns that were dependent on the probe structure. The most promising hits were applied to standard chemoproteomic workflows to identify protein targets. Our results demonstrate the feasibility of rapid, on-resin synthesis of diverse macrocyclic electrophiles to generate new classes of covalent ligands.