Shared posts

16 Aug 09:58

[ASAP] Charting the Evolution of Chemoenzymatic Strategies in the Syntheses of Complex Natural Products

by Carter N. Stout, Nour M. Wasfy, Fang Chen, and Hans Renata

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Journal of the American Chemical Society
DOI: 10.1021/jacs.3c03422
16 Aug 09:16

Enhanced active-site electric field accelerates enzyme catalysis

by Chu Zheng

Nature Chemistry, Published online: 10 August 2023; doi:10.1038/s41557-023-01287-x

The design and improvement of enzymes based on physical principles remain challenging. Now, the vibrational Stark effect has been used to demonstrate how an electrostatic model can unify the catalytic effects of distinct chemical forces in a quantitative manner and guide the design of enzyme variants that outperform their natural counterpart.
09 Aug 15:15

[ASAP] Can a Hydroxynitrile Lyase Catalyze an Oxidative Cleavage?

by José Coloma, Peter-Leon Hagedoorn, Isabel Bento, and Ulf Hanefeld

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ACS Catalysis
DOI: 10.1021/acscatal.3c02249
09 Aug 08:02

Bonding wood with uncondensed lignins as adhesives

by Guangxu Yang
R.B. Leveson-Gower

Nature like wood

Nature, Published online: 08 August 2023; doi:10.1038/s41586-023-06507-5

Bonding wood with uncondensed lignins as adhesives
07 Aug 14:19

[ASAP] Using Data Science for Mechanistic Insights and Selectivity Predictions in a Non-Natural Biocatalytic Reaction

by Hanna D. Clements, Autumn R. Flynn, Bryce T. Nicholls, Daria Grosheva, Sarah J. Lefave, Morgan T. Merriman, Todd K. Hyster, and Matthew S. Sigman
R.B. Leveson-Gower

I am 99% sure that this mutant will give you between 30 and 80% ee. Oh woops, I was wrong half the time, nevermind, lets publish in JACS

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Journal of the American Chemical Society
DOI: 10.1021/jacs.3c03639
03 Aug 12:04

Could this ancient whale be the heaviest animal ever?

by Emma Marris
R.B. Leveson-Gower

Spoiler: its your mum

Nature, Published online: 02 August 2023; doi:10.1038/d41586-023-02457-0

Massive vertebrae and other fossilized remains found in Peru point to an Eocene-epoch beast of colossal proportions.
03 Aug 11:54

An expandable, modular de novo protein platform for precision redox engineering

by George H. HutchinsClaire E. M. NobleH. Adrian BunzelChristopher WilliamsPaulina DubielSathish K. N. YadavPaul M. MolinaroRob BarringerHector BlackburnBenjamin J. HardyAlice E. ParnellCharles LandauPaul R. RaceThomas A. A. OliverRonald L. KoderMatthew P. CrumpChristiane SchaffitzelA. Sofia F. OliveiraAdrian J. MulhollandJ. L. Ross AndersonaSchool of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United KingdombBrisSynBio Synthetic Biology Research Centre, Life Sciences Building, University of Bristol, Bristol BS8 1TQ, United KingdomcSchool of Chemistry, University of Bristol, Bristol BS8 1TS, United KingdomdDepartment of Physics, The City College of New York, New York, NY 10031eGraduate Programs of Physics, Biology, Chemistry and Biochemistry, The Graduate Center of The City University of New York, New York, NY 10016
Proceedings of the National Academy of Sciences, Volume 120, Issue 31, August 2023.
02 Aug 10:14

Modern chemistry is rubbish

by Hannah Flerlage

Nature Reviews Chemistry, Published online: 31 July 2023; doi:10.1038/s41570-023-00523-9

To combat worsening environmental crises, chemistry needs a redesign. We see the need for a triple focus on efficiency, safety and circularity as a prerequisite for chemistry to serve sustainability and ensure that essential chemical products and processes are waste-free, functional and safe for both humans and the environment.
01 Aug 15:31

[ASAP] DeCOIL: Optimization of Degenerate Codon Libraries for Machine Learning-Assisted Protein Engineering

by Jason Yang, Julie Ducharme, Kadina E. Johnston, Francesca-Zhoufan Li, Yisong Yue, and Frances H. Arnold

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ACS Synthetic Biology
DOI: 10.1021/acssynbio.3c00301
01 Aug 15:02

[ASAP] Comment on: “Computer Simulations Reveal an Entirely Entropic Activation Barrier for the Chemical Step in a Designer Enzyme”

by Abbie Lear, J. L. Ross Anderson, Donald Hilvert, Vickery L. Arcus, Marc W. van der Kamp, H. Adrian Bunzel, and Adrian J. Mulholland
ACS Catalysis
DOI: 10.1021/acscatal.3c01906
01 Aug 14:56

Photoenzymatic enantioselective intermolecular radical hydroamination

by Zhengyi Zhang

Nature Catalysis, Published online: 31 July 2023; doi:10.1038/s41929-023-00994-5

The generation of nitrogen-centred radicals and their subsequent reaction with control of stereoselectivity is a difficult task in synthetic chemistry. Now, the photoenzymatic production of nitrogen-centred radicals and their use in challenging enantioselective intermolecular radical hydroaminations is reported.
28 Jul 16:45

Isonitrile‐Proline ‐ A Versatile Handle for the Chemoselective Derivatization of Collagen Peptides

by Giuseppe Antoniazzi, Rebecca J. B. Schäfer, Maurice Biedermann, Eric Rüttimann, Helma Wennemers
Isonitrile-Proline - A Versatile Handle for the Chemoselective Derivatization of Collagen Peptides

Isonitrileproline (Inp) is introduced as the first isonitrile-containing amino acid for solid-phase peptide synthesis. The conformation directing properties of the isonitrile group and its effect on the collagen triple helix were elucidated. The value of Inp for peptide derivatization was showcased by a chemoselective ligation with a functional chlorooxime.


Abstract

Functional groups that allow for chemoselective and bioorthogonal derivatization are valuable tools for the labelling of peptides and proteins. The isonitrile is such a group but synthetic methods for its incorporation into peptides by solid-phase peptide synthesis are not known. Here, we introduce (4S)- and (4R)-isonitrileproline (Inp) as building blocks for solid-phase peptide synthesis. Conformational studies of (4S)- and (4R)-Inp and thermal stability analysis of Inp-containing collagen triple helices revealed that the isonitrile group exerts a stereoelectronic gauche effect. We showcase the value of Inp for bioorthogonal labelling by derivatization of Inp-containing collagen model peptides (CMPs). Dual labelling with a pair of bioorthogonal reactions of a CMP containing Inp and azidoproline residues further highlights the versatility of the new isonitrile-containing amino acids.

28 Jul 16:42

[ASAP] Asymmetric Carbohydroxylation of Alkenes Using Photoenzymatic Catalysis

by Yao Ouyang, Joshua Turek-Herman, Tianzhang Qiao, and Todd K. Hyster
R.B. Leveson-Gower

acceptance in 5 weeks :O

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Journal of the American Chemical Society
DOI: 10.1021/jacs.3c06618
28 Jul 12:44

Stereoselective amino acid synthesis by synergistic photoredox-pyridoxal radical biocatalysis

by Lei Cheng, Dian Li, Binh Khanh Mai, Zhiyu Bo, Lida Cheng, Peng Liu, Yang Yang
Science, Volume 381, Issue 6656, Page 444-451, July 2023.
27 Jul 13:34

[ASAP] Introduction of Asymmetry in the Fused 4-Oxalocrotonate Tautomerases

by Kaci Erwin, R. Yvette Moreno, Bert-Jan Baas, Y. Jessie Zhang, and Christian P. Whitman

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Biochemistry
DOI: 10.1021/acs.biochem.3c00180
25 Jul 11:22

Bioelectrocatalytic Synthesis: Concepts and Applications

by Dylan G. Boucher, Emily Carroll, Zachary A. Nguyen, Rohit G. Jadhav, Olja Simoska, Kevin Beaver, Shelley D. Minteer
Bioelectrocatalytic Synthesis: Concepts and Applications

Bioelectrocatalytic synthesis represents an exciting merger of selective biocatalysis and green electrochemical methods for the synthesis of value-added chemicals. In this review we introduce the key concepts and vital applications of both enzymatic and microbial electrosynthetic systems.


Abstract

Bioelectrocatalytic synthesis is the conversion of electrical energy into value-added products using biocatalysts. These methods merge the specificity and selectivity of biocatalysis and energy-related electrocatalysis to address challenges in the sustainable synthesis of pharmaceuticals, commodity chemicals, fuels, feedstocks and fertilizers. However, the specialized experimental setups and domain knowledge for bioelectrocatalysis pose a significant barrier to adoption. This review introduces key concepts of bioelectrosynthetic systems. We provide a tutorial on the methods of biocatalyst utilization, the setup of bioelectrosynthetic cells, and the analytical methods for assessing bioelectrocatalysts. Key applications of bioelectrosynthesis in ammonia production and small-molecule synthesis are outlined for both enzymatic and microbial systems. This review serves as a necessary introduction and resource for the non-specialist interested in bioelectrosynthetic research.

25 Jul 07:59

[ASAP] Enantioselective Self-Replicators

by Shuo Yang, Yannick Geiger, Marc Geerts, Marcel J. Eleveld, Armin Kiani, and Sijbren Otto

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Journal of the American Chemical Society
DOI: 10.1021/jacs.3c05472
24 Jul 09:39

Biocompatible α‐Methylenation of Metabolic Butyraldehyde in Living Bacteria

by Jonathan A Dennis, Nick W Johnson, Thomas W Thorpe, Stephen Wallace
Biocompatible α-Methylenation of Metabolic Butyraldehyde in Living Bacteria

Introducing new abiotic chemistry into living cells is a grand challenge in the field of chemical biotechnology. Here, we show that phosphate and/or biogenic amines mediate the non-enzymatic α-methylenation of butyraldehyde under biocompatible reaction conditions and can be interfaced with butyraldehyde biosynthesis from D-glucose in the bacterium Escherichia coli.


Abstract

Small molecule organocatalysts are abundant in all living organisms. However, their use as organocatalysts in cells has been underexplored. Herein, we report that organocatalytic aldol chemistry can be interfaced with living Escherichia coli to enable the α-methylenation of cellular aldehydes using biogenic amines such as L-Pro or phosphate. The biocompatible reaction is mild and can be interfaced with butyraldehyde generated from D-glucose via engineered metabolism to enable the production of 2-methylenebutanal (2-MB) and 2-methylbutanal (2-MBA) by anaerobic fermentation, and 2-methylbutanol (2-MBO) by whole-cell catalysis. Overall, this study demonstrates the combination of non-enzymatic organocatalytic and metabolic reactions in vivo for the sustainable synthesis of valuable non-natural chemicals that cannot be accessed using enzymatic chemistry alone.

24 Jul 09:34

[ASAP] Enabling Broader Adoption of Biocatalysis in Organic Chemistry

by Evan O. Romero, Anthony T. Saucedo, José R. Hernández-Meléndez, Di Yang, Suman Chakrabarty, and Alison R. H. Narayan

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JACS Au
DOI: 10.1021/jacsau.3c00263
24 Jul 09:07

[ASAP] μMap Photoproximity Labeling Enables Small Molecule Binding Site Mapping

by Sean W. Huth, James V. Oakley, Ciaran P. Seath, Jacob B. Geri, Aaron D. Trowbridge, Dann L. Parker, Jr., Frances P. Rodriguez-Rivera, Adam G. Schwaid, Carlo Ramil, Keun Ah Ryu, Cory H. White, Olugbeminiyi O. Fadeyi, Rob C. Oslund, and David W. C. MacMillan
R.B. Leveson-Gower

needs more authors

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Journal of the American Chemical Society
DOI: 10.1021/jacs.3c03325
24 Jul 09:05

[ASAP] Enzymatic Hydroxylation of Aliphatic C–H Bonds by a Mn/Fe Cofactor

by Magan M. Powell, Guodong Rao, R. David Britt, and Jonathan Rittle

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Journal of the American Chemical Society
DOI: 10.1021/jacs.3c03419
24 Jul 09:05

[ASAP] Artificial Metalloenzyme-Catalyzed Enantioselective Amidation via Nitrene Insertion in Unactivated C(sp3)–H Bonds

by Kun Yu, Zhi Zou, Nico V. Igareta, Ryo Tachibana, Julia Bechter, Valentin Köhler, Dongping Chen, and Thomas R. Ward

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Journal of the American Chemical Society
DOI: 10.1021/jacs.3c03969
21 Jul 07:59

Enzyme-controlled stereoselective radical cyclization to arenes enabled by metalloredox biocatalysis

by Wenzhen Fu

Nature Catalysis, Published online: 20 July 2023; doi:10.1038/s41929-023-00986-5

Controlling the stereoselectivity in free-radical-mediated reactions is challenging. Now, a metalloredox biocatalysis strategy is reported that uses engineered cytochrome P450 enzymes for the unnatural asymmetric radical cyclization of α-haloesters to arenes.
20 Jul 08:05

Decoupling of catalysis and transition state analog binding from mutations throughout a phosphatase revealed by high-throughput enzymology

by Craig J. MarkinDaniel A. MokhtariSiyuan DuTzanko DoukovFanny SundenJordan A. CookPolly M. FordyceDaniel HerschlagaDepartment of Biochemistry, Stanford University, Stanford, CA 94305bDepartment of Chemistry, Stanford University, Stanford, CA 94305cStanford Synchrotron Radiation Light Source, Stanford Linear Accelerator Centre National Accelerator Laboratory, Menlo Park, CA 94025dChEM-H Institute, Stanford University, Stanford, CA 94305eDepartment of Bioengineering, Stanford University, Stanford, CA 94305fDepartment of Genetics, Stanford University, Stanford, CA 94305gChan Zuckerberg Biohub, San Francisco, CA 94110hDepartment of Chemical Engineering, Stanford University, Stanford, CA 94305
Proceedings of the National Academy of Sciences, Volume 120, Issue 29, July 2023.
17 Jul 08:00

[ASAP] The Unmet Need for Artificial Saliva

by Alla Katsnelson
R.B. Leveson-Gower

I need it for... reasons...

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ACS Central Science
DOI: 10.1021/acscentsci.3c00803
17 Jul 07:56

De novo design of protein structure and function with RFdiffusion

by Joseph L. Watson
R.B. Leveson-Gower

someone pls explain to me thx

Nature, Published online: 11 July 2023; doi:10.1038/s41586-023-06415-8

De novo design of protein structure and function with RFdiffusion
17 Jul 07:51

[ASAP] Novel Au(I)-Based Artificial Metallo-Cycloisomerase for Catalyzing the Cycloisomerization of γ-Alkynoic Acids

by Chenlin Lu, Xue Peng, Basudev Maity, Xiang Sheng, Yinhuan Zhou, Takafumi Ueno, Zheng Liu, and Diannan Lu

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ACS Catalysis
DOI: 10.1021/acscatal.3c01197
17 Jul 07:34

[ASAP] Asymmetric Catalytic Friedel–Crafts Reactions of Unactivated Arenes

by Sebastian Brunen, Benjamin Mitschke, Markus Leutzsch, and Benjamin List
R.B. Leveson-Gower

now do it with an enzyme

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Journal of the American Chemical Society
DOI: 10.1021/jacs.3c05148
17 Jul 07:33

[ASAP] Engineering a Carbonyl Reductase to Simultaneously Increase Activity Toward Bulky Ketone and Isopropanol for Dynamic Kinetic Asymmetric Reduction via Enzymatic Hydrogen Transfer

by Hongliu Zhang, Xi Chen, Tong Lv, Qian Li, Weidong Liu, Jinhui Feng, Xiangtao Liu, Peiyuan Yao, Qiaqing Wu, and Dunming Zhu
R.B. Leveson-Gower

Strong independent enzyme.

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ACS Catalysis
DOI: 10.1021/acscatal.3c01569
14 Jul 07:26

Engineered cytochrome P450 for direct arylalkene-to-ketone oxidation via highly reactive carbocation intermediates

by Sebastian Gergel

Nature Catalysis, Published online: 13 July 2023; doi:10.1038/s41929-023-00979-4

The direct regioselective oxidation of internal alkenes to ketones poses an important synthetic challenge. Now, directed evolution of a cytochrome P450 enzyme affords a ketone synthase that can efficiently oxidize internal arylalkenes directly to ketones with high chemo- and regioselectivity.